@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0322: (2016-04-21 )
MRCSVFGTGYLGATHAVGMAQLGHEVVGVDIDPGKVAKLAGGDIPFYEPGLRKLLTDNLAAGRLRFTTDYDMAADFADVHFLGVGTPQKIGEYGADLRHVHAVIDALVPRLVRASILVGKSTVPVGTAAELGHRAGALAPRGVDVEIAWNPEFLREGFAVHDTLNPDRIVLGVQDDSTRAEVAVRELYAPLLAAGVPFLVTDLQTAELVKVSANAFLATKISFINAISEVCEAAGADVSQLADALGYDPRIGRQCLNAGLGFGGGCLPKDIRAFMARAGELGADQALTFLREVDSINMRRRTKMVELATTACGGSLLGANIAVLGAAFKPESDDVRDSPALNVAGQLQLNGATVHVYDPKALDNAHRLFPTLNYAVSVAEACERADAVLVLTEWREFIDLEPADLANRVRARVIVDGRNCLDVTRWRRAGWRVFRLGVPRLGH

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_A_5(1DLJ)
UDG_STRPY
[Raw transfer]




NAD_A_3(4A7P)
?
[Raw transfer]




NAD_A_3(4A7P)
?
[Raw transfer]




NAD_A_3(4XR9)
?
[Raw transfer]




NAD_A_3(4XR9)
?
[Raw transfer]




GOL_A_9(1DLJ)
UDG_STRPY
[Raw transfer]




UPG_A_2(3VTF)
?
[Raw transfer]




UPG_A_2(3VTF)
?
[Raw transfer]




30 PsiBlast_CBE 96.8736%-101 - C3 -2Y0D - ? -
27 PsiBlast_CBE 96.6336%-103 - C3 -2Y0C - ? -
3 PsiBlast_PDB 96.6036%-101 - C3 -2Y0E - ? -
23 PsiBlast_CBE 96.5436%-106 - C3 -2Y0E - ? -
5 PsiBlast_PDB 96.4836%-100 - C3 -2Y0D - ? -
29 PsiBlast_CBE 96.4036%-102 - C3 -2Y0D - ? -
4 PsiBlast_PDB 96.3836% -99 - C3 -2Y0C - ? -
108 HHSearch 96.3036% -97 - C3 -2Y0C - ? -
26 PsiBlast_CBE 96.2336%-104 - C3 -2Y0C - ? -
25 PsiBlast_CBE 96.1136%-100 - C3 -2Y0E - ? -
28 PsiBlast_CBE 96.0336%-104 - C3 -2Y0C - ? -
31 PsiBlast_CBE 95.5036%-103 - C3 -2Y0D - ? -
24 PsiBlast_CBE 95.3536%-102 - C3 -2Y0E - ? -
115 HHSearch 94.4636%-101 * C3 *3GG2 - ? -
81 PsiBlast_CBE 93.5032%-100 - C3 -3KHU - UGDH_HUMAN -
78 PsiBlast_CBE 93.4332%-100 - C3 -3KHU - UGDH_HUMAN -
60 PsiBlast_CBE 93.0732% -99 - C3 -2QG4 - UGDH_HUMAN -
88 PsiBlast_CBE 92.9832% -99 - C3 -3ITK - UGDH_HUMAN -
77 PsiBlast_CBE 92.9432%-101 - C3 -3KHU - UGDH_HUMAN -
15 PsiBlast_PDB 92.8732%-100 - C3 -3KHU - UGDH_HUMAN -
112 HHSearch 91.7539% -96 - C3 -3VTF 6.7 ?
107 HHSearch 91.4040% -98 - C3 -4A7P 7.9 ?
1 PsiBlast_PDB 91.2039% -97 - C3 -4A7P 7.9 ?
6 PsiBlast_PDB 91.0540% -95 - C3 -3VTF 6.7 ?
94 PsiBlast_CBE 80.2433% -87 - C3 -4XR9 8.9 ?
114 HHSearch 80.1630% -86 - C3 -4XR9 9.0 ?