@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0400c: (2016-04-22 )
MSTPTPPALDRDDPLGLDASLSSDEIAVRDTVRRFCAEHVTPHVAAWFEDGDLPVARDLAKQFGELGLLGMQLHGHGCGGASAVHYGLACRELEAADSGIRSLVSVQGSLAMFAIASFGSDEQKRQWLPGMATGDLLGCFGLTEPDVGSDPAAMKTRARRDGPDWVITGGKMWITNGSVADVAIVWAATDDGIRGFIVPTDTPGFTANTIGHKLSLRASITSELVLDNVRLPADAMLPGATGLRAPLACLSEARYGIVWGAMGAARSAWQCALDYARQRTQFGRPIAGFQLTQAKLVDMAVELHKGQLLSLHLGRLKDRVGLRPDQVSFGKLNNTREALKICRTARTILGGNGISLEYPVIRHMVNLESVLTYEGTPEMHQLVLGQAFTGLAAFR

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_2(2R0N)
GCDH_HUMAN
[Raw transfer]




FDA_A_2(3SF6)
?
[Raw transfer]




FDA_A_2(3SF6)
?
[Raw transfer]




FAD_E_5(1SIR)
GCDH_HUMAN
[Raw transfer]




FAD_A_2(2R0M)
GCDH_HUMAN
[Raw transfer]




FAD_E_5(1SIQ)
GCDH_HUMAN
[Raw transfer]




FAD_E_5(1SIQ)
GCDH_HUMAN
[Raw transfer]




FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_B_4(2D29)
?
[Raw transfer]




FAD_A_3(2D29)
?
[Raw transfer]




FAD_C_3(2DVL)
?
[Raw transfer]




FAD_B_8(4L1F)
?
[Raw transfer]




FAD_A_3(4L1F)
?
[Raw transfer]




FAD_B_11(1BUC)
ACDS_MEGEL
[Raw transfer]




FAD_D_4(2DVL)
?
[Raw transfer]




FAD_K_11(1JQI)
ACADS_RAT
[Raw transfer]




FAD_I_9(1JQI)
ACADS_RAT
[Raw transfer]




TGC_A_3(2R0N)
GCDH_HUMAN
[Raw transfer]




NBC_I_9(1SIR)
GCDH_HUMAN
[Raw transfer]




4NI_A_3(2R0M)
GCDH_HUMAN
[Raw transfer]




1 PsiBlast_PDB 98.9169% -99 - C2 -3SF6 10.2 ?
109 HHSearch 97.3069%-101 - C2 -3SF6 10.2 ?
22 PsiBlast_CBE 94.9762%-100 - C2 -3SWO - ? -
23 PsiBlast_CBE 94.4362%-100 - C2 -3SWO - ? -
21 PsiBlast_CBE 94.3462% -98 - C2 -3SWO - ? -
2 PsiBlast_PDB 94.2862% -98 - C2 -3SWO - ? -
106 HHSearch 93.3963% -98 - C2 -3SWO - ? -
26 PsiBlast_CBE 88.2752% -98 - C2 -2EBA - ? -
27 PsiBlast_CBE 87.5252% -96 - C2 -2EBA - ? -
28 PsiBlast_CBE 87.4652% -96 - C2 -2EBA - ? -
24 PsiBlast_CBE 87.4552% -96 - C2 -2EBA - ? -
110 HHSearch 87.3253% -98 - C2 -2EBA - ? -
3 PsiBlast_PDB 87.1852% -97 - C2 -2EBA - ? -
25 PsiBlast_CBE 86.9152% -94 - C2 -2EBA - ? -
29 PsiBlast_CBE 86.5952% -95 - C2 -2EBA - ? -
30 PsiBlast_CBE 86.2352% -96 - C2 -2EBA - ? -
108 HHSearch 83.8349% -92 - C2 -3II9 - ? -
11 PsiBlast_PDB 81.7049% -91 - C2 -3II9 - ? -
105 HHSearch 81.4949% -95 - C2 -1SIQ 9.0 GCDH_HUMAN
39 PsiBlast_CBE 81.1649% -88 - C2 -3GQT - ? -
5 PsiBlast_PDB 80.6148% -92 - C2 -2R0N 9.6 GCDH_HUMAN
4 PsiBlast_PDB 80.4248% -95 - C2 -1SIR 9.8 GCDH_HUMAN
8 PsiBlast_PDB 79.8648% -94 - C2 -1SIQ 9.0 GCDH_HUMAN
6 PsiBlast_PDB 79.2348% -93 - C2 -2R0M 9.3 GCDH_HUMAN
85 PsiBlast_CBE 70.5033% -80 - C2 -2D29 8.9 ?
84 PsiBlast_CBE 70.3233% -84 - C2 -2D29 8.6 ?
75 PsiBlast_CBE 69.3334% -87 - C2 -2DVL 8.9 ?
56 PsiBlast_CBE 67.4235% -83 - C2 -1JQI 9.5 ACADS_RAT
74 PsiBlast_CBE 67.3834% -86 - C2 -2DVL 9.3 ?
18 PsiBlast_PDB 67.0135% -81 - C2 -1JQI 9.9 ACADS_RAT
93 Fugue 66.3832% -84 - C2 -1BUC 9.8 ACDS_MEGEL
67 PsiBlast_CBE 64.1931% -84 - C2 -4L1F 9.5 ?
66 PsiBlast_CBE 64.1331% -83 - C2 -4L1F 7.1 ?
69 PsiBlast_CBE 55.3335% -84 - C2 -1BUC 9.8 ACDS_MEGEL
68 PsiBlast_CBE 54.7235% -81 - C2 -1BUC 9.9 ACDS_MEGEL