@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0462: (2016-04-22 )
MTHYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKYWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSANVVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFHGLVGHMINF

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_5(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_A_3(2A8X)
DLDH_MYCTU
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_A_3(2EQ6)
?
[Raw transfer]




FAD_A_3(2A8X)
DLDH_MYCTU
[Raw transfer]




FAD_B_4(2EQ6)
?
[Raw transfer]




FAD_A_3(3II4)
DLDH_MYCTU
[Raw transfer]




FAD_B_5(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_C_3(1LVL)
DLDH1_PSEPU
[Raw transfer]




FAD_B_6(2EQ7)
?
[Raw transfer]




FAD_A_4(2EQ7)
?
[Raw transfer]




FAD_A_7(2YQU)
?
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_B_8(2YQU)
?
[Raw transfer]




FAD_A_3(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_B_5(1V59)
DLDH_YEAST
[Raw transfer]




FAD_B_11(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_C_3(1BHY)
?
[Raw transfer]




FAD_A_4(1V59)
DLDH_YEAST
[Raw transfer]




FAD_A_3(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_A_3(3URH)
?
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_C_3(1OJT)
?
[Raw transfer]




FAD_A_3(4JDR)
DLDH_ECOLI
[Raw transfer]




FAD_C_3(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_B_4(3LAD)
DLDH_AZOVI
[Raw transfer]




FAD_B_4(1LPF)
DLDH_PSEFL
[Raw transfer]




FAD_D_4(1JEH)
DLDH_YEAST
[Raw transfer]




FAD_A_4(1EBD)
DLDH1_GEOSE
[Raw transfer]




FAD_B_4(2QAE)
DLDH_TRYCR
[Raw transfer]




FAD_A_3(2QAE)
DLDH_TRYCR
[Raw transfer]




2 PsiBlast_PDB 98.79100%-114 - C2 -4M52 - DLDH_MYCTU -
23 PsiBlast_CBE 98.28100%-114 - C2 -4M52 - DLDH_MYCTU -
109 HHSearch 98.13100%-115 - C2 -2A8X 12.7 DLDH_MYCTU
21 PsiBlast_CBE 97.82100%-116 - C2 -4M52 - DLDH_MYCTU -
3 PsiBlast_PDB 97.8098%-115 - C2 -2A8X 12.7 DLDH_MYCTU
24 PsiBlast_CBE 97.58100%-113 - C2 -3II4 12.8 DLDH_MYCTU
1 PsiBlast_PDB 97.47100%-113 - C2 -3II4 12.8 DLDH_MYCTU
22 PsiBlast_CBE 96.97100%-115 - C2 -4M52 - DLDH_MYCTU -
121 HHSearch 72.5239%-100 - C2 -1EBD 10.6 DLDH1_GEOSE
4 PsiBlast_PDB 71.1739% -96 - C2 -1EBD 10.6 DLDH1_GEOSE
10 PsiBlast_PDB 71.1037% -98 - C2 -3LAD 9.5 DLDH_AZOVI
104 HHSearch 71.0838% -98 - C2 -2QAE 8.1 DLDH_TRYCR
7 PsiBlast_PDB 70.6937% -96 - C2 -1LPF 10.6 DLDH_PSEFL
28 PsiBlast_CBE 70.5437% -96 - C2 -1LPF 10.5 DLDH_PSEFL
71 PsiBlast_CBE 70.5337% -91 - C2 -2EQ9 - ? -
72 PsiBlast_CBE 70.2637% -90 - C2 -2EQ9 - ? -
55 PsiBlast_CBE 69.9835% -95 - C2 -1ZMD - DLDH_HUMAN -
80 PsiBlast_CBE 69.8537% -91 - C2 -2EQ6 9.7 ?
70 PsiBlast_CBE 69.6037% -90 - C2 -2EQ9 - ? -
20 PsiBlast_PDB 69.5937% -91 - C2 -2EQ8 - ? -
19 PsiBlast_PDB 69.1437% -88 - C2 -2EQ6 9.7 ?
115 HHSearch 68.9637% -92 - C2 -2EQ6 9.7 ?
25 PsiBlast_CBE 68.8539% -97 - C2 -1EBD 9.5 DLDH1_GEOSE
93 Fugue 68.3537% -97 - C2 -1EBD 8.0 DLDH1_GEOSE
103 HHSearch 68.1234% -98 - C2 -1LVL 9.4 DLDH1_PSEPU
122 HHSearch 68.0738%-101 - C2 -2YQU 10.8 ?
26 PsiBlast_CBE 67.2738% -98 - C2 -2YQU 11.0 ?
106 HHSearch 67.0737% -97 * C2 *3URH 9.8 ?
5 PsiBlast_PDB 66.9438% -98 - C2 -2EQ7 9.1 ?
27 PsiBlast_CBE 66.5638% -98 - C2 -2EQ7 8.6 ?
39 PsiBlast_CBE 66.4137% -91 - C2 -3LAD 12.1 DLDH_AZOVI
88 PsiBlast_CBE 66.1738% -98 - C2 -4JDR 13.0 DLDH_ECOLI
110 HHSearch 65.8837% -89 - C2 -1OJT 10.0 ?
87 PsiBlast_CBE 65.3638% -98 - C2 -4JDR 13.0 DLDH_ECOLI
15 PsiBlast_PDB 65.2837% -91 - C2 -2QAE 9.3 DLDH_TRYCR
68 PsiBlast_CBE 65.1437% -89 - C2 -1JEH 11.4 DLDH_YEAST
66 PsiBlast_CBE 64.6837% -90 - C2 -2QAE 8.9 DLDH_TRYCR
16 PsiBlast_PDB 64.4937% -90 - C2 -1JEH 11.0 DLDH_YEAST
67 PsiBlast_CBE 64.4037% -89 - C2 -1V59 11.1 DLDH_YEAST
18 PsiBlast_PDB 64.2737% -91 - C2 -3URH 9.0 ?
17 PsiBlast_PDB 63.9837% -89 - C2 -1V59 10.7 DLDH_YEAST
92 PsiBlast_CBE 62.4536% -89 - C2 -1BHY 10.4 ?
91 PsiBlast_CBE 61.1136% -88 - C2 -1OJT 10.0 ?