@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0667: (2016-04-24 )
MADSRQSKTAASPSPSRPQSSSNNSVPGAPNRVSFAKLREPLEVPGLLDVQTDSFEWLIGSPRWRESAAERGDVNPVGGLEEVLYELSPIEDFSGSMSLSFSDPRFDDVKAPVDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDETIDKSTDKTLHSVKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTSEQIVERFGFSEIMRSTLEKDNTVGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYKVNKKLGLHVGEPITSSTLTEEDVVATIEYLVRLHEGQTTMTVPGGVEVPVETDDIDHFGNRRLRTVGELIQNQIRVGMSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVVDGVVSDEIVYLTADEEDRHVVAQANSPIDADGRFVEPRVLVRRKAGEVEYVPSSEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVAEESGVIEEVSADYITVMHDNGTRRTYRMRKFARSNHGTCANQCPIVDAGDRVEAGQVIADGPCTDDGEMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNISDEVLADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLADGTPVDIILNTHGVPRRMNIGQILETHLGWCAHSGWKVDAAKGVPDWAARLPDELLEAQPNAIVSTPVFDGAQEAELQGLLSCTLPNRDGDVLVDADGKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIELREGEDEDLERAAANLGINLSRNESASVEDLA

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_T_18(4XLN)
?
[Raw transfer]
-
NACID_Q_15(4XLN)
?
[Raw transfer]
-
NACID_I_9(4YLN)
RPOB_ECOLI
[Raw transfer]
-
NACID_R_18(4YLN)
RPOB_ECOLI
[Raw transfer]
-
NACID_R_18(4YLP)
RPOB_ECOLI
[Raw transfer]
-
NACID_I_9(4YLO)
RPOB_ECOLI
[Raw transfer]
-
NACID_I_9(4YLP)
RPOB_ECOLI
[Raw transfer]
-
NACID_R_18(4YLO)
RPOB_ECOLI
[Raw transfer]
-
NACID_P_16(4S20)
RPOB_ECOLI
[Raw transfer]
-
NACID_H_13(4G7Z)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4G7O)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIQ)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIP)
RPOB_THET8
[Raw transfer]
-
NACID_G_7(5E17)
?
[Raw transfer]
-
CHAIN_M_13(4MEX)
RPOB_ECOLI
[Raw transfer]
-
NACID_H_8(4OIO)
RPOB_THET8
[Raw transfer]
-
NACID_R_17(4G7O)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIN)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4G7H)
RPOB_THET8
[Raw transfer]
-
NACID_Z_16(4WQS)
RPOB_THET8
[Raw transfer]
-
CHAIN_H_8(4Q4Z)
RPOB_THET8
[Raw transfer]
-
CHAIN_I_7(4MQ9)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4Q5S)
RPOB_THET8
[Raw transfer]
-
NACID_H_8(4OIR)
RPOB_THET8
[Raw transfer]
-
NACID_R_16(4G7H)
RPOB_THET8
[Raw transfer]
-
NACID_Q_17(3AOI)
RPOB_THET8
[Raw transfer]
-
CHAIN_N_14(4MEX)
RPOB_ECOLI
[Raw transfer]
-
NACID_S_19(3AOI)
RPOB_THET8
[Raw transfer]
-
NACID_G_7(5E18)
?
[Raw transfer]
-
NACID_X_4(2O5I)
RPOB_THET8
[Raw transfer]
-
NACID_X_4(2PPB)
RPOB_THET8
[Raw transfer]
-
NACID_R_15(4G7Z)
RPOB_THET8
[Raw transfer]
-
NACID_U_21(3AOI)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2PPB)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2O5J)
RPOB_THET8
[Raw transfer]
-
NACID_G_1(2O5I)
RPOB_THET8
[Raw transfer]
-
NACID_Q_17(3AOH)
RPOB_THET8
[Raw transfer]
-
NACID_I_13(4WQS)
RPOB_THET8
[Raw transfer]
-
NACID_T_20(4XLR)
RPOB_THEAQ
[Raw transfer]
-
NACID_X_4(2O5J)
RPOB_THET8
[Raw transfer]
-
NACID_Q_17(4XLR)
RPOB_THEAQ
[Raw transfer]
-
100 HHSearch 87.6156% -66 - C6 -4YFK - RPOB_ECO24 -
118 Fugue 86.1156% -63 - C6 -3LU0 - RPOB_ECOLI -
28 PsiBlast_CBE 83.7149% -72 - C6 -4OIQ Error RPOB_THET8
29 PsiBlast_CBE 83.6949% -70 - C6 -4OIP Error RPOB_THET8
27 PsiBlast_CBE 83.6149% -71 - C6 -4OIR Error RPOB_THET8
22 PsiBlast_CBE 83.5049% -70 - C6 -5E17 Error ?
31 PsiBlast_CBE 83.4949% -70 - C6 -4OIN Error RPOB_THET8
36 PsiBlast_CBE 83.4749% -72 - C6 -4G7H Error RPOB_THET8
17 PsiBlast_PDB 83.4549% -72 - C6 -4G7H Error RPOB_THET8
21 PsiBlast_CBE 83.4149% -68 - C6 -5E18 Error ?
26 PsiBlast_CBE 83.4049% -70 - C6 -4Q4Z Error RPOB_THET8
18 PsiBlast_PDB 83.3249% -68 - C6 -4G7O Error RPOB_THET8
30 PsiBlast_CBE 83.1649% -68 - C6 -4OIO Error RPOB_THET8
34 PsiBlast_CBE 83.1349% -65 - C6 -4G7Z Error RPOB_THET8
35 PsiBlast_CBE 83.0249% -67 - C6 -4G7O Error RPOB_THET8
19 PsiBlast_PDB 82.9349% -65 - C6 -4G7Z Error RPOB_THET8
25 PsiBlast_CBE 82.7649% -68 - C6 -4Q5S Error RPOB_THET8
32 PsiBlast_CBE 82.4049% -68 - C6 -4MQ9 Error RPOB_THET8
54 PsiBlast_CBE 81.9649% -63 - C6 -4XLN Error ?
53 PsiBlast_CBE 81.9449% -64 - C6 -4XLN Error ?
43 PsiBlast_CBE 81.9349% -61 - C6 -2O5I Error RPOB_THET8
41 PsiBlast_CBE 81.6949% -61 - C6 -2PPB Error RPOB_THET8
23 PsiBlast_CBE 81.5849% -61 - C6 -4WQS Error RPOB_THET8
12 PsiBlast_PDB 81.5249% -62 - C6 -2PPB Error RPOB_THET8
24 PsiBlast_CBE 81.5049% -60 - C6 -4WQS Error RPOB_THET8
10 PsiBlast_PDB 81.4749% -61 - C6 -2O5I Error RPOB_THET8
11 PsiBlast_PDB 81.2649% -61 - C6 -2O5J Error RPOB_THET8
42 PsiBlast_CBE 81.2549% -60 - C6 -2O5J Error RPOB_THET8
51 PsiBlast_CBE 80.7449% -63 - C6 -4XLR Error RPOB_THEAQ
52 PsiBlast_CBE 80.6749% -63 - C6 -4XLR Error RPOB_THEAQ
15 PsiBlast_PDB 80.6049% -61 - C6 -3AOH Error RPOB_THET8
16 PsiBlast_PDB 80.5049% -63 - C6 -3AOI Error RPOB_THET8
40 PsiBlast_CBE 80.4949% -63 - C6 -3AOI Error RPOB_THET8
39 PsiBlast_CBE 80.1049% -62 - C6 -3AOI Error RPOB_THET8
88 PsiBlast_CBE 69.5458% -58 - C6 -4MEX 2.0 RPOB_ECOLI
89 PsiBlast_CBE 69.2858% -59 - C6 -4MEX 2.6 RPOB_ECOLI
69 PsiBlast_CBE 68.8058% -58 - C6 -4YLO 1.5 RPOB_ECOLI
70 PsiBlast_CBE 68.4958% -57 - C6 -4YLO 2.6 RPOB_ECOLI
72 PsiBlast_CBE 68.3558% -54 - C6 -4YLN 2.6 RPOB_ECOLI
67 PsiBlast_CBE 68.2858% -61 - C6 -4YLP 2.0 RPOB_ECOLI
73 PsiBlast_CBE 68.2158% -60 - C6 -4YLN 1.6 RPOB_ECOLI
66 PsiBlast_CBE 67.9658% -56 - C6 -4YLP 2.7 RPOB_ECOLI
87 PsiBlast_CBE 65.0158% -56 - C6 -4S20 3.2 RPOB_ECOLI