@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0685: (2016-04-24 )
MAKAKFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLHDKFPDLNETKAFDQIDNAPEERQRGITINIAHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVGVPYILVALNKADAVDDEELLELVEMEVRELLAAQEFDEDAPVVRVSALKALEGDAKWVASVEELMNAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIVGIRPSTTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGVKREDVERGQVVTKPGTTTPHTEFEGQVYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEMVMPGDNTNISVKLIQPVAMDEGLRFAIREGGRTVGAGRVTKIIK

Atome Classification :

(63 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_6(1D8T)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(4LBV)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4LBW)
EFTU1_THETH
[Raw transfer]




GTP_A_3(3VMF)
EF1A_AERPE
[Raw transfer]




GDP_H_6(1DG1)
EFTU2_ECOLI
[Raw transfer]




GDP_B_6(1EFC)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GNP_P_9(1B23)
EFTU_THEAQ
[Raw transfer]




GNP_A_2(4LBZ)
EFTU1_THETH
[Raw transfer]




GDP_B_(1D8T)
EFTU1_ECOLI
[Raw transfer]




GDP_A_3(1HA3)
EFTU1_THET8
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GNP_A_2(4H9G)
EFTU1_THETH
[Raw transfer]




GNP_A_3(1EXM)
EFTU1_THETH
[Raw transfer]




GDP_A_5(1EFC)
EFTU1_ECOLI
[Raw transfer]




GDP_G_5(1DG1)
EFTU2_ECOLI
[Raw transfer]




GNP_A_3(2C77)
EFTU2_THET8
[Raw transfer]




GDP_A_3(3U2Q)
?
[Raw transfer]




GNP_A_3(1EFT)
EFTU_THEAQ
[Raw transfer]




GDP_B_7(3U6K)
?
[Raw transfer]




GDP_A_2(3WYA)
EF1A_PYRHO
[Raw transfer]




GNP_A_5(1OB2)
EFTU2_ECOLI
[Raw transfer]




GDP_A_4(4G5G)
EFTU1_ECOLI
[Raw transfer]




GDP_A_5(3U6K)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(4LC0)
EFTU1_THETH
[Raw transfer]




GDP_K_10(4IW3)
EFTU1_PSEPK
[Raw transfer]




GNP_B_7(4PC6)
?
[Raw transfer]




GDP_A_7(1TUI)
EFTU_THEAQ
[Raw transfer]




GNP_A_2(4LBY)
EFTU1_THETH
[Raw transfer]




GDP_B_8(1TUI)
EFTU_THEAQ
[Raw transfer]




GNP_A_5(4PC6)
?
[Raw transfer]




GDP_A_4(4P3Y)
?
[Raw transfer]




GNP_A_4(1KK1)
IF2G_PYRAB
[Raw transfer]




GNP_A_4(1KK1)
IF2G_PYRAB
[Raw transfer]




GDP_C_9(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_A_3(2FX3)
EFTU1_ECOLI
[Raw transfer]




GDP_A_2(3PEN)
IF2G_SULSO
[Raw transfer]




GDP_B_6(3WY9)
EF1A_PYRHO
[Raw transfer]




GCP_A_26(4M53)
IF2G_SULSO
[Raw transfer]




GDP_A_5(3WY9)
EF1A_PYRHO
[Raw transfer]




GDP_A_4(1KK2)
IF2G_PYRAB
[Raw transfer]




GDP_A_3(1ETU)
EFTU1_ECOLI
[Raw transfer]




GDP_A_5(3WY9)
EF1A_PYRHO
[Raw transfer]




GDP_A_5(4ZV4)
EFTU_PSEAE
[Raw transfer]




G4P_A_5(4ZCM)
TYPA_ECOLI
[Raw transfer]




GDP_A_5(4ZCL)
TYPA_ECOLI
[Raw transfer]




GDP_B_9(4ZCL)
TYPA_ECOLI
[Raw transfer]




GNP_A_3(4PC7)
EFTU1_ECOLI
[Raw transfer]




GDP_D_4(1JNY)
EF1A_SULSO
[Raw transfer]




GDP_B_7(4IW3)
EFTU1_PSEPK
[Raw transfer]




GDP_A_4(1KK3)
IF2G_PYRAB
[Raw transfer]




GDP_B_5(1SKQ)
EF1A_SULSO
[Raw transfer]




GDP_C_3(1JNY)
EF1A_SULSO
[Raw transfer]




GDP_A_4(1SKQ)
EF1A_SULSO
[Raw transfer]




G4P_B_9(4ZCM)
TYPA_ECOLI
[Raw transfer]




GDP_B_7(4ZV4)
EFTU_PSEAE
[Raw transfer]




FMT_A_24(4M53)
IF2G_SULSO
[Raw transfer]




FMT_A_23(4M53)
IF2G_SULSO
[Raw transfer]




TAC_B_8(2HCJ)
EFTU1_ECOUT
[Raw transfer]




EDO_A_10(4TMX)
IF2P_CHATD
[Raw transfer]




5 PsiBlast_PDB 94.8674% -91 - C1 -1DG1 8.1 EFTU2_ECOLI
31 PsiBlast_CBE 94.1974%-102 - C1 -4PC3 - EFTU1_ECOLI -
41 PsiBlast_CBE 93.6974% -92 - C1 -1D8T 8.8 EFTU1_ECOLI
42 PsiBlast_CBE 93.6774% -88 - C1 -1D8T 8.6 EFTU1_ECOLI
11 PsiBlast_PDB 92.9374% -95 - C1 -4P3Y 9.3 ?
22 PsiBlast_CBE 92.5974% -85 - C1 -3U6K 7.1 ?
33 PsiBlast_CBE 92.5374%-106 - C1 -4PC1 - ? -
26 PsiBlast_CBE 92.4271% -85 - C1 -1TTT - EFTU_THEAQ -
1 PsiBlast_PDB 92.2872% -89 - C1 -4ZV4 6.7 EFTU_PSEAE
15 PsiBlast_PDB 92.1174%-102 - C1 -4PC6 6.1 ?
2 PsiBlast_PDB 92.0874% -91 - C1 -3U6K 7.3 EFTU1_ECOLI
23 PsiBlast_CBE 92.0474% -89 - C1 -1DG1 7.5 EFTU2_ECOLI
32 PsiBlast_CBE 92.0074%-101 - C1 -4PC2 - ? -
30 PsiBlast_CBE 91.9974%-100 - C1 -4PC6 6.9 ?
3 PsiBlast_PDB 91.8974% -89 - C1 -3U2Q 6.8 ?
7 PsiBlast_PDB 91.8771% -92 - C1 -1TUI 6.3 EFTU_THEAQ
13 PsiBlast_PDB 91.8574%-104 - C1 -4PC2 - ? -
25 PsiBlast_CBE 91.8171% -91 - C1 -1TUI 6.3 EFTU_THEAQ
39 PsiBlast_CBE 91.7574% -85 - C1 -2FX3 6.7 EFTU1_ECOLI
14 PsiBlast_PDB 91.7474%-103 - C1 -4PC3 - EFTU1_ECOLI -
17 PsiBlast_PDB 91.7171% -86 - C1 -1EFT 9.0 EFTU_THEAQ
43 PsiBlast_CBE 91.7070% -88 - C1 -4H9G 9.5 EFTU1_THETH
8 PsiBlast_PDB 91.6871% -85 - C1 -1B23 8.7 EFTU_THEAQ
19 PsiBlast_PDB 91.6674% -89 - C1 -1EFC 8.4 EFTU1_ECOLI
101 HHSearch 91.6173% -88 - C1 -2C78 9.3 EFTU1_THET8
24 PsiBlast_CBE 91.5671% -92 - C1 -1TUI 5.7 EFTU_THEAQ
4 PsiBlast_PDB 91.5274% -86 - C1 -4G5G 8.5 EFTU1_ECOLI
48 PsiBlast_CBE 91.4070% -86 - C1 -1EXM 9.3 EFTU1_THETH
36 PsiBlast_CBE 91.3674% -87 - C1 -1EFC 8.4 EFTU1_ECOLI
44 PsiBlast_CBE 91.2870% -91 - C1 -2C78 9.3 EFTU1_THET8
53 PsiBlast_CBE 91.1770% -87 - C1 -4LBV 9.2 EFTU1_THETH
49 PsiBlast_CBE 90.9570% -89 - C1 -4LC0 9.3 EFTU1_THETH
50 PsiBlast_CBE 90.9070% -86 - C1 -4LBZ 9.2 EFTU1_THETH
52 PsiBlast_CBE 90.7170% -86 - C1 -4LBW 9.3 EFTU1_THETH
18 PsiBlast_PDB 90.6074% -87 - C1 -1OB2 7.2 EFTU2_ECOLI
21 PsiBlast_CBE 90.0372% -86 - C1 -4ZV4 5.2 EFTU_PSEAE
51 PsiBlast_CBE 90.0270% -89 - C1 -4LBY 9.2 EFTU1_THETH
45 PsiBlast_CBE 89.9170% -88 - C1 -2C77 9.5 EFTU2_THET8
58 PsiBlast_CBE 88.0767% -93 - C1 -4IW3 6.5 EFTU1_PSEPK
47 PsiBlast_CBE 87.8470% -89 - C1 -1HA3 8.7 EFTU1_THET8
57 PsiBlast_CBE 87.7967% -99 - C1 -4IW3 7.6 EFTU1_PSEPK
16 PsiBlast_PDB 86.6274% -97 - C1 -4PC7 7.6 EFTU1_ECOLI
66 PsiBlast_CBE 83.1175%-100 - C1 -2HCJ 3.8 EFTU1_ECOUT
83 PsiBlast_CBE 68.2031% -87 - C1 -1JNY 7.8 EF1A_SULSO
82 PsiBlast_CBE 68.0931% -87 - C1 -1SKQ 8.2 EF1A_SULSO
71 PsiBlast_CBE 68.0036% -77 - C1 -3WYA 7.9 EF1A_PYRHO
73 PsiBlast_CBE 67.7636% -76 - C1 -3WY9 7.9 EF1A_PYRHO
105 HHSearch 67.6337% -77 - C1 -3WY9 7.9 EF1A_PYRHO
84 PsiBlast_CBE 67.4631% -88 - C1 -1JNY 8.1 EF1A_SULSO
81 PsiBlast_CBE 67.2731% -87 - C1 -1SKQ 6.8 EF1A_SULSO
118 HHSearch 67.1334% -75 - C1 -1KK1 8.1 IF2G_PYRAB
72 PsiBlast_CBE 65.5936% -72 - C1 -3WY9 7.8 EF1A_PYRHO
80 PsiBlast_CBE 64.2633% -61 - C1 -3VMF 8.5 EF1A_AERPE
40 PsiBlast_CBE 56.6874%-112 - C1 -1ETU 4.7 EFTU1_ECOLI
92 PsiBlast_CBE 54.5331% -80 - C1 -1KK3 7.2 IF2G_PYRAB
89 PsiBlast_CBE 54.2131% -79 - C1 -1KK2 7.4 IF2G_PYRAB
90 PsiBlast_CBE 54.2031% -80 - C1 -1KK1 8.0 IF2G_PYRAB
94 PsiBlast_CBE 40.7831% -69 - C1 -4M53 8.5 IF2G_SULSO
95 PsiBlast_CBE 40.4331% -62 - C1 -4ZCM 4.9 TYPA_ECOLI
93 PsiBlast_CBE 40.3731% -67 - C1 -3PEN 8.3 IF2G_SULSO
97 PsiBlast_CBE 40.3331% -56 - C1 -4ZCL 5.4 TYPA_ECOLI
96 PsiBlast_CBE 39.0231% -60 - C1 -4ZCM 4.4 TYPA_ECOLI
98 PsiBlast_CBE 36.3731% -54 - C1 -4ZCL 5.7 TYPA_ECOLI