@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0884c: (2016-04-26 )
MADQLTPHLEIPTAIKPRDGRFGSGPSKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLIDKRSLHLTYGEFSAKFASAVSKNPFVGEPIIITSDPGSAPEPQTDPSVDVIAWAHNETSTGVAVAVRRPEGSDDALVVIDATSGAGGLPVDIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVDDVDAGTVAKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVERL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_B_6(3VOM)
SERC_MYCTU
[Raw transfer]



PLP_A_8(2FYF)
SERC_MYCTU
[Raw transfer]



PLP_A_3(3VOM)
SERC_MYCTU
[Raw transfer]



PLP_A_8(2FYF)
SERC_MYCTU
[Raw transfer]



SER_A_2(3FFR)
?
[Raw transfer]



PC4_B_7(2FYF)
SERC_MYCTU
[Raw transfer]
2 PsiBlast_PDB 99.03100%-100 - C1 -3VOM 6.1 SERC_MYCTU
1 PsiBlast_PDB 98.70100%-101 - C1 -2FYF 5.6 SERC_MYCTU
22 PsiBlast_CBE 98.59100%-104 - C1 -2FYF 2.9 SERC_MYCTU
21 PsiBlast_CBE 98.44100%-100 - C1 -3VOM 6.1 SERC_MYCTU
35 HHSearch 96.0198% -99 - C1 -2FYF 5.6 SERC_MYCTU
6 PsiBlast_PDB 66.8020% -81 - C1 -2DR1 - ? -
3 PsiBlast_PDB 64.7725% -86 - C1 -3FFR 3.2 ?
34 HHSearch 62.9420% -76 - C1 -2DR1 - ? -
36 HHSearch 61.1120% -77 - C1 -3M5U - SERC_CAMJE -
54 Fugue 60.2620% -82 - C1 -1BJO - SERC_ECOLI -
11 PsiBlast_PDB 59.3621% -79 - C1 -2BI1 - SERC_BACAO -
16 PsiBlast_PDB 59.2421% -81 - C1 -2BIA - SERC_BACAO -
45 HHSearch 59.2223% -77 - C1 -3FFR - ? -
10 PsiBlast_PDB 59.1821% -79 - C1 -2BHX - SERC_BACAO -
42 HHSearch 59.1122% -86 - C1 -3E77 - SERC_HUMAN -
15 PsiBlast_PDB 58.9821% -81 - C1 -2BI9 - SERC_BACAO -
13 PsiBlast_PDB 58.7321% -79 - C1 -2BI3 - SERC_BACAO -
14 PsiBlast_PDB 58.6821% -81 - C1 -2BI5 - SERC_BACAO -
12 PsiBlast_PDB 58.6721% -79 - C1 -2BI2 - SERC_BACAO -
20 PsiBlast_PDB 58.4221% -79 - C1 -2BIG - SERC_BACAO -