@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0945: (2016-04-27 )
MLTGVTRQKILITGASSGLGAGMARSFAAQGRDLALCARRTDRLTELKAELSQRYPDIKIAVAELDVNDHERVPKVFAELSDEIGGIDRVIVNAGIGKGARLGSGKLWANKATIETNLVAALVQIETALDMFNQRGSGHLVLISSVLGVKGVPGVKAAYAASKAGVRSLGESLRAEYAQRPIRVTVLEPGYIESEMTAKSASTMLMVDNATGVKALVAAIEREPGRAAVPWWPWAPLVRLMWVLPPRLTRRFA

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_B_7(2JAP)
?
[Raw transfer]




NAP_C_15(1Q7B)
FABG_ECOLI
[Raw transfer]




NDP_C_9(2JAP)
?
[Raw transfer]




NDP_A_5(2JAP)
?
[Raw transfer]




NDP_D_11(2JAP)
?
[Raw transfer]




NAP_D_16(1Q7B)
FABG_ECOLI
[Raw transfer]




NDP_B_6(4WK6)
?
[Raw transfer]




FMT_A_4(3QRW)
ACT3_STRCO
[Raw transfer]




EMO_B_5(3RI3)
ACT3_STRCO
[Raw transfer]




EMO_B_4(3RI3)
ACT3_STRCO
[Raw transfer]




EMO_B_5(3CSD)
ACT3_STRCO
[Raw transfer]




EMO_A_8(3RI3)
ACT3_STRCO
[Raw transfer]




EMO_A_8(3CSD)
ACT3_STRCO
[Raw transfer]




PG4_A_4(3SJ7)
?
[Raw transfer]




EMO_A_6(2RHR)
ACT3_STRCO
[Raw transfer]




EDO_A_11(3RRO)
FABG_VIBCH
[Raw transfer]




EDO_B_22(3RRO)
FABG_VIBCH
[Raw transfer]




1PE_A_6(2PNF)
FABG_AQUAE
[Raw transfer]




EDO_B_21(3RRO)
FABG_VIBCH
[Raw transfer]




58 PsiBlast_CBE 84.7437%-101 - C1 -2JAP 13.8 ?
56 PsiBlast_CBE 84.3237%-102 - C1 -2JAP 13.5 ?
57 PsiBlast_CBE 84.1937%-103 - C1 -2JAP 13.7 ?
55 PsiBlast_CBE 83.8737%-103 - C1 -2JAP 13.7 ?
32 PsiBlast_CBE 80.8731% -88 - C1 -1IY8 - LVR_LEIAQ -
30 PsiBlast_CBE 80.5531% -90 - C1 -1IY8 - LVR_LEIAQ -
31 PsiBlast_CBE 79.3031% -88 - C1 -1IY8 - LVR_LEIAQ -
29 PsiBlast_CBE 79.0731% -88 - C1 -1IY8 - LVR_LEIAQ -
28 PsiBlast_CBE 79.0131% -87 - C1 -1IY8 - LVR_LEIAQ -
4 PsiBlast_PDB 78.7331% -89 - C1 -1IY8 - LVR_LEIAQ -
27 PsiBlast_CBE 77.4831% -89 - C1 -1IY8 - LVR_LEIAQ -
33 PsiBlast_CBE 77.4131% -89 - C1 -1IY8 - LVR_LEIAQ -
21 PsiBlast_CBE 75.8333% -96 - C1 -3RKU - YM71_YEAST -
1 PsiBlast_PDB 75.7133% -94 - C1 -3RKU - YM71_YEAST -
23 PsiBlast_CBE 75.3033% -95 - C1 -3RKU - YM71_YEAST -
22 PsiBlast_CBE 73.0733% -94 - C1 -3RKU - YM71_YEAST -
25 PsiBlast_CBE 71.5633% -89 - C1 -1XG5 - DHR11_HUMAN -
3 PsiBlast_PDB 69.8933% -89 - C1 -1XG5 - DHR11_HUMAN -
5 PsiBlast_PDB 69.3232% -97 - C1 -3ASU - ? -
26 PsiBlast_CBE 68.8133% -87 - C1 -1XG5 - DHR11_HUMAN -
72 PsiBlast_CBE 66.7733%-101 - C1 -3RI3 4.5 ACT3_STRCO
79 PsiBlast_CBE 62.5933% -96 - C1 -2RHR 2.9 ACT3_STRCO
76 PsiBlast_CBE 62.5533% -99 - C1 -3CSD 4.4 ACT3_STRCO
77 PsiBlast_CBE 61.0433% -95 - C1 -3CSD 2.9 ACT3_STRCO
73 PsiBlast_CBE 60.7833% -95 - C1 -3RI3 3.6 ACT3_STRCO
9 PsiBlast_PDB 58.7230% -84 - C1 -2PNF 3.6 FABG_AQUAE
75 PsiBlast_CBE 58.4833% -93 - C1 -3QRW 3.0 ACT3_STRCO
50 PsiBlast_CBE 58.2832% -87 - C1 -1Q7B 7.3 FABG_ECOLI
43 PsiBlast_CBE 57.7231% -93 - C1 -4WK6 6.3 ?
47 PsiBlast_CBE 57.4131% -82 - C1 -3RRO 3.0 FABG_VIBCH
48 PsiBlast_CBE 57.0631% -83 - C1 -3RRO 3.0 FABG_VIBCH
49 PsiBlast_CBE 56.7632% -83 - C1 -1Q7B 6.9 FABG_ECOLI
17 PsiBlast_PDB 56.0433% -68 - C1 -3SJ7 1.7 ?