@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0949: (2016-04-27 )
MSVHATDAKPPGPSPADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITFTNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRRLLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSDDLARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDTNHAQYVLVRELVGRDSNDGIPPGELCVVGDADQSIYAFRGATIRNIEDFERDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHDEARFVAEEIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKEIRDIVAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQGKVPMLNTRAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELARLDNLNELVSVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIPEHGAGVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLYVSRAIVRSSWGQPMLNPESRFLREIPQELIDWRRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSGVGESAMSLIDFGSSGRVKLMHNHAPVTKL

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_X_7(4C30)
?
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_C_1(2IS1)
UVRD_ECOLI
[Raw transfer]
-
NACID_E_3(2IS1)
UVRD_ECOLI
[Raw transfer]
-
CHAIN_K_5(4C30)
?
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
CHAIN_Y_8(4C30)
?
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
CHAIN_M_5(4C2T)
?
[Raw transfer]
-
CHAIN_L_6(4C30)
?
[Raw transfer]
-
NACID_D_2(2IS1)
UVRD_ECOLI
[Raw transfer]
-
CHAIN_M_5(4C2T)
?
[Raw transfer]
-
CHAIN_X_3(4C2U)
?
[Raw transfer]
-
CHAIN_X_3(4C2U)
?
[Raw transfer]
-
NACID_Y_1(3PJR)
?
[Raw transfer]
-
NACID_C_1(2IS6)
UVRD_ECOLI
[Raw transfer]
-
CHAIN_Y_4(4C2U)
?
[Raw transfer]
-
7 PsiBlast_PDB 97.6641% -87 - C6 -2IS6 8.5 UVRD_ECOLI
5 PsiBlast_PDB 96.8641% -91 - C6 -2IS1 4.3 UVRD_ECOLI
6 PsiBlast_PDB 95.5441% -93 - C6 -2IS2 - UVRD_ECOLI -
1 PsiBlast_PDB 94.8545% -82 - C6 -3PJR 9.7 ?
35 HHSearch 94.2447% -86 - C6 -1PJR - PCRA_GEOSE -
23 PsiBlast_CBE 93.6740% -85 - C6 -4C2T - ? -
8 PsiBlast_PDB 93.3140% -81 - C6 -4C2T 7.7 ?
22 PsiBlast_CBE 93.2041% -90 - C6 -2IS1 5.6 UVRD_ECOLI
9 PsiBlast_PDB 92.8441% -81 - C6 -4C2U 5.9 ?
2 PsiBlast_PDB 92.5045% -85 - C6 -1QHG - PCRA_GEOSE -
38 HHSearch 92.3842% -82 - C6 -4C2U 9.2 ?
3 PsiBlast_PDB 92.3645% -84 - C6 -1PJR - PCRA_GEOSE -
27 PsiBlast_CBE 92.1941% -82 - C6 -4C2U 7.9 ?
34 HHSearch 92.0240% -81 - C6 -4C2T 9.1 ?
26 PsiBlast_CBE 91.4041% -80 - C6 -4C30 4.5 ?
10 PsiBlast_PDB 91.3441% -82 - C6 -4C30 8.0 ?
24 PsiBlast_CBE 91.3341% -83 - C6 -4C30 5.1 ?
25 PsiBlast_CBE 90.4341% -76 - C6 -4C30 4.5 ?
11 PsiBlast_PDB 88.7739% -83 - C6 -1UAA 9.3 REP_ECOLI
37 HHSearch 88.7639% -84 - C6 -1UAA 10.9 REP_ECOLI
28 PsiBlast_CBE 88.2539% -79 - C6 -1UAA 8.7 REP_ECOLI
21 PsiBlast_CBE 85.3346% -83 - C6 -2PJR 8.9 ?
4 PsiBlast_PDB 84.8546% -84 - C6 -2PJR 11.0 ?
32 PsiBlast_CBE 33.4357% -14 - C6 -2PJR 4.2 ?
31 PsiBlast_CBE 32.4857% -23 - C6 -2PJR 3.1 ?