@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1240: (2016-04-29 )
MSASPLKVAVTGAAGQIGYSLLFRLASGSLLGPDRPIELRLLEIEPALQALEGVVMELDDCAFPLLSGVEIGSDPQKIFDGVSLALLVGARPRGAGMERSDLLEANGAIFTAQGKALNAVAADDVRVGVTGNPANTNALIAMTNAPDIPRERFSALTRLDHNRAISQLAAKTGAAVTDIKKMTIWGNHSATQYPDLFHAEVAGKNAAEVVNDQAWIEDEFIPTVAKRGAAIIDARGASSAASAASATIDAARDWLLGTPADDWVSMAVVSDGSYGVPEGLISSFPVTTKGGNWTIVSGLEIDEFSRGRIDKSTAELADERSAVTELGLI

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_F_6(1Y7T)
MDH_THETH
[Raw transfer]




NDP_C_3(1Y7T)
MDH_THETH
[Raw transfer]




NDP_C_3(1Y7T)
MDH_THETH
[Raw transfer]




NAX_B_4(1BDM)
MDH_THETH
[Raw transfer]




NAD_B_4(1BMD)
MDH_THETH
[Raw transfer]




NAP_C_3(2CVQ)
MDH_THETH
[Raw transfer]




NAD_A_7(4MDH)
MDHC_PIG
[Raw transfer]




NAD_A_3(4I1I)
?
[Raw transfer]




NAD_D_4(1B8U)
MDH_AQUAR
[Raw transfer]




NAP_D_4(2CVQ)
MDH_THETH
[Raw transfer]




NAD_A_3(1BMD)
MDH_THETH
[Raw transfer]




NDP_C_3(1WZI)
MDH_THETH
[Raw transfer]




NAD_C_3(1B8V)
MDH_AQUAR
[Raw transfer]




NAD_B_5(5MDH)
MDHC_PIG
[Raw transfer]




NDP_D_4(1WZI)
MDH_THETH
[Raw transfer]




NAD_B_8(4MDH)
MDHC_PIG
[Raw transfer]




NAD_A_3(5MDH)
MDHC_PIG
[Raw transfer]




NAP_C_3(1CIV)
MDHP_FLABI
[Raw transfer]




NAD_A_3(5MDH)
MDHC_PIG
[Raw transfer]




NAD_D_4(1WZE)
MDH_THETH
[Raw transfer]




NAD_C_3(1WZE)
MDH_THETH
[Raw transfer]




MAK_A_4(5MDH)
MDHC_PIG
[Raw transfer]




MAK_B_6(5MDH)
MDHC_PIG
[Raw transfer]




EDO_A_7(4I1I)
?
[Raw transfer]




1 PsiBlast_PDB 98.4799% -92 - C4 -4TVO - MDH_MYCTU -
49 HHSearch 98.05100% -91 - C4 -4TVO - MDH_MYCTU -
21 PsiBlast_CBE 97.2799% -98 - C4 -4TVO - MDH_MYCTU -
6 PsiBlast_PDB 89.9363% -96 - C4 -2CVQ 6.3 MDH_THETH
48 HHSearch 89.8063% -94 - C4 -1Y7T 9.5 MDH_THETH
5 PsiBlast_PDB 89.7363% -97 - C4 -1Y7T 9.5 MDH_THETH
26 PsiBlast_CBE 89.6463% -97 - C4 -1Y7T 9.4 MDH_THETH
2 PsiBlast_PDB 89.4563% -95 - C4 -4KDE - MDH_THETH -
30 PsiBlast_CBE 89.3263% -96 - C4 -1WZE 5.8 MDH_THETH
25 PsiBlast_CBE 89.1863% -97 - C4 -2CVQ 6.2 MDH_THETH
27 PsiBlast_CBE 88.8863% -95 - C4 -1BMD 9.6 MDH_THETH
7 PsiBlast_PDB 88.8863% -95 - C4 -1BMD 8.3 MDH_THETH
29 PsiBlast_CBE 88.7963% -94 - C4 -1WZI 6.3 MDH_THETH
10 PsiBlast_PDB 88.4863% -94 - C4 -1WZI 6.4 MDH_THETH
9 PsiBlast_PDB 88.4563% -96 - C4 -1WZE 5.4 MDH_THETH
28 PsiBlast_CBE 88.2463% -97 - C4 -1BDM 9.9 MDH_THETH
3 PsiBlast_PDB 88.0163% -97 - C4 -4KDF - MDH_THETH -
4 PsiBlast_PDB 87.9863% -95 - C4 -1IZ9 - MDH_THETH -
23 PsiBlast_CBE 87.4363% -97 - C4 -4KDF - MDH_THETH -
22 PsiBlast_CBE 87.1163% -99 - C4 -4KDF - MDH_THETH -
12 PsiBlast_PDB 85.5658% -88 - C4 -1B8U 9.6 MDH_AQUAR
13 PsiBlast_PDB 84.8858% -88 - C4 -1B8V 9.2 MDH_AQUAR
32 PsiBlast_CBE 83.2852% -83 - C4 -5MDH 8.6 MDHC_PIG
16 PsiBlast_PDB 82.5952% -87 - C4 -4MDH 10.0 MDHC_PIG
17 PsiBlast_PDB 82.5050% -86 - C4 -1CIV 6.6 MDHP_FLABI
15 PsiBlast_PDB 82.4452% -78 - C4 -5MDH 8.6 MDHC_PIG
33 PsiBlast_CBE 81.4452% -88 - C4 -4MDH 8.5 MDHC_PIG
61 HHSearch 81.0352% -75 * C4 *5MDH 8.6 MDHC_PIG
20 PsiBlast_PDB 79.6654% -83 - C4 -4I1I 10.6 ?