@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1267c: (2016-04-30 )
MAGSATVEKRLDFGLLGPLQMTIDGTPVPSGTPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLHDIASGRGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRSAVTLNDGDHIRICDHEFTFQISAGTHGGT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_E_3(2FF4)
EMBR_MYCTU
[Raw transfer]
-
CHAIN_E_3(2FF4)
EMBR_MYCTU
[Raw transfer]
-
CHAIN_F_4(2FF4)
EMBR_MYCTU
[Raw transfer]
-
24 HHSearch 98.51100%-105 - C1 -2FF4 6.2 EMBR_MYCTU
21 PsiBlast_CBE 97.17100%-107 - C1 -2FF4 4.4 EMBR_MYCTU
2 PsiBlast_PDB 96.80100%-105 - C1 -2FF4 6.2 EMBR_MYCTU
1 PsiBlast_PDB 96.26100%-106 - C1 -2FEZ - EMBR_MYCTU -
11 PsiBlast_PDB 46.2433% -96 - C1 -3POA - -
9 PsiBlast_PDB 46.0932% -84 - C1 -4QCJ - ODHI_CORGL -
48 Fugue 45.8222% -93 - C1 -1WLN - -
32 HHSearch 45.5923%-114 - C1 -2PMU - ? -
26 HHSearch 45.2834% -93 - C1 -3OUN - -
10 PsiBlast_PDB 45.1833% -90 - C1 -3PO8 - -
36 HHSearch 44.7033% -93 - C1 -3PO8 - -
4 PsiBlast_PDB 44.3036% -79 - C1 -2KFU - GARA_MYCTU -
30 HHSearch 44.0713%-111 - C1 -2ZXJ - WALR_STAAU -
41 HHSearch 43.6422% -99 - C1 -4NHJ - ? -
3 PsiBlast_PDB 43.5936% -80 - C1 -2XT9 - ? -
6 PsiBlast_PDB 43.3936% -74 - C1 -3OUN - -
53 Fugue 43.1321% -97 * C1 *1GXC - CHK2_HUMAN -
38 HHSearch 42.3723%-108 - C1 -2RV8 - ? -
33 HHSearch 42.3718%-115 - C1 -3RJP - ? -
5 PsiBlast_PDB 42.1336% -89 - C1 -2KKL - Y1858_MYCBO -