@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1348: (2016-04-30 )
MARGLQGVMLRSFGARDHTATVIETISIAPHFVRVRMVSPTLFQDAEAEPAAWLRFWFPDPNGSNTEFQRAYTISEADPAAGRFAVDVVLHDPAGPASSWARTVKPGATIAVMSLMGSSRFDVPEEQPAGYLLIGDSASIPGMNGIIETVPNDVPIEMYLEQHDDNDTLIPLAKHPRLRVRWVMRRDEKSLAEAIENRDWSDWYAWATPEAAALKCVRVRLRDEFGFPKSEIHAQAYWNAGRAMGTHRATEPAATEPEVGAAPQPESAVPAPARGSWRAQAASRLLAPLKLPLVLSGVLAALVTLAQLAPFVLLVELSRLLVSGAGAHRLFTVGFAAVGLLGTGALLAAALTLWLHVIDARFARALRLRLLSKLSRLPLGWFTSRGSGSIKKLVTDDTLALHYLVTHAVPDAVAAVVAPVGVLVYLFVVDWRVALVLFGPVLVYLTITSSLTIQSGPRIVQAQRWAEKMNGEAGSYLEGQPVIRVFGAASSSFRRRLDEYIGFLVAWQRPLAGKKTLMDLATRPATFLWLIAATGTLLVATHRMDPVNLLPFMFLGTTFGARLLGIAYGLGGLRTGLLAARHLQVTLDETELAVREHPREPLDGEAPATVVFDHVTFGYRPGVPVIQDVSLTLRPGTVTALVGPSGSGKSTLATLLARFHDVERGAIRVGGQDIRSLAADELYTRVGFVLQEAQLVHGTAAENIALAVPDAPAEQVQVAAREAQIHDRVLRLPDGYDTVLGANSGLSGGERQRLTIARAILGDTPVLILDEATAFADPESEYLVQQALNRLTRDRTVLVIAHRLHTITRADQIVVLDHGRIVERGTHEELLAAGGRYCRLWDTGQGSRVAVAAAQDGTR

Atome Classification :

(62 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(4K8O)

[Raw transfer]




ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_D_6(2IXE)

[Raw transfer]




ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]




ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_D_15(2IXF)

[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]




ATP_D_5(3VX4)
?
[Raw transfer]




ATP_A_2(2IXG)

[Raw transfer]




ANP_A_3(4PL0)
MCJD_ECOLX
[Raw transfer]




ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ADP_A_2(3NHB)

[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_A_3(3NHA)

[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ATP_A_3(3VX4)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_A_2(3NH9)

[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ADP_B_2(2FFB)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ADP_A_2(5DGX)

[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




104 HHSearch 83.3028%-117 - C3 -4Q4H - Y288_THEMA -
11 PsiBlast_PDB 76.6434%-105 - C3 -4AYX 5.5 ABCBA_HUMAN
106 HHSearch 76.1029%-108 - C3 -3ZDQ - ABCBA_HUMAN -
5 PsiBlast_PDB 75.3631%-105 - C3 -3QF4 - Y288_THEMA -
6 PsiBlast_PDB 75.3531%-105 - C3 -4Q4A - Y288_THEMA -
109 HHSearch 75.2225%-110 - C3 -4Q4H - ? -
7 PsiBlast_PDB 75.0231%-101 - C3 -4Q4H - Y288_THEMA -
8 PsiBlast_PDB 74.9231%-100 - C3 -4Q4J - Y288_THEMA -
10 PsiBlast_PDB 74.6334%-103 - C3 -4AYT 5.7 ABCBA_HUMAN
12 PsiBlast_PDB 74.6134%-102 - C3 -3ZDQ - ABCBA_HUMAN -
112 HHSearch 74.3328%-110 - C3 -3WMG - ? -
103 HHSearch 73.9825%-115 - C3 -4RY2 - ? -
16 PsiBlast_PDB 72.6533%-104 - C3 -4AYW 4.1 ABCBA_HUMAN
130 Fugue 72.4823%-103 - C2 -4F4C - PGP1_CAEEL -
59 PsiBlast_CBE 71.8031%-104 - C3 -3WMG - ? -
110 HHSearch 69.7926%-108 - C3 -4MRS - ATM1_NOVAD -
22 PsiBlast_CBE 68.9731% -96 - C3 -3B60 - MSBA_SALTY -
23 PsiBlast_CBE 68.8731% -96 - C3 -3B60 - MSBA_SALTY -
4 PsiBlast_PDB 68.6731% -96 - C3 -3B60 - MSBA_SALTY -
21 PsiBlast_CBE 68.6531% -96 - C3 -3B60 - MSBA_SALTY -
32 PsiBlast_CBE 57.4344%-105 - C3 -3NHB 6.5
19 PsiBlast_PDB 56.9344%-103 - C3 -3NH9 6.4
20 PsiBlast_PDB 56.6444%-101 - C3 -3NHA 6.6
30 PsiBlast_CBE 54.3847% -99 - C3 -2ONJ 6.0 Y1866_STAAM
14 PsiBlast_PDB 54.3247% -99 - C3 -2ONJ 5.8 Y1866_STAAM
31 PsiBlast_CBE 54.0247% -99 - C3 -2HYD 4.5 Y1866_STAAM
13 PsiBlast_PDB 53.8647% -99 - C3 -2HYD 4.4 Y1866_STAAM
56 PsiBlast_CBE 52.7242%-104 - C3 -1XEF 7.2 HLYBP_ECOLX
50 PsiBlast_CBE 52.3642%-104 - C3 -2FGJ 7.0
57 PsiBlast_CBE 52.3342%-101 - C3 -1XEF 7.2 HLYBP_ECOLX
42 PsiBlast_CBE 51.8742%-102 - C3 -2FGK 7.2 HLYBP_ECOLX
37 PsiBlast_CBE 51.6342% -98 - C3 -2FF7 6.4
74 PsiBlast_CBE 51.5839% -93 - C3 -2IXE 7.6 TAP1_RAT
55 PsiBlast_CBE 51.5842% -99 - C3 -1XEF 7.1
40 PsiBlast_CBE 51.5442%-102 - C3 -2FGK 7.3
70 PsiBlast_CBE 51.4639% -91 - C3 -2IXF 7.8 TAP1_RAT
73 PsiBlast_CBE 51.4539% -98 - C3 -2IXE 7.3
68 PsiBlast_CBE 51.3641% -97 - C3 -1JJ7 6.4
58 PsiBlast_CBE 51.3542%-101 - C3 -1XEF 6.6 HLYBP_ECOLX
71 PsiBlast_CBE 51.3239% -93 - C3 -2IXF 7.6 TAP1_RAT
36 PsiBlast_CBE 51.2542% -99 - C3 -2PMK 6.9
75 PsiBlast_CBE 51.2038%-100 - C3 -4K8O 7.1
54 PsiBlast_CBE 50.9342% -96 - C3 -2FFA 6.4
72 PsiBlast_CBE 50.7339% -91 - C3 -2IXF 7.4 TAP1_RAT
53 PsiBlast_CBE 50.6942% -96 - C3 -2FGJ 7.1 HLYBP_ECOLX
76 PsiBlast_CBE 50.5438% -97 - C3 -2IXG 7.0
51 PsiBlast_CBE 50.1142% -99 - C3 -2FGJ 7.0 HLYBP_ECOLX
44 PsiBlast_CBE 50.1042% -95 - C3 -2FFB 6.3
39 PsiBlast_CBE 50.0642% -97 - C3 -3B5J 6.9
52 PsiBlast_CBE 49.7342% -96 - C3 -2FGJ 7.4 HLYBP_ECOLX
62 PsiBlast_CBE 49.6435% -98 - C3 -3VX4 6.4 ?
69 PsiBlast_CBE 49.3539% -93 - C3 -2IXF 7.9
43 PsiBlast_CBE 48.6742% -98 - C3 -2FGK 7.8 HLYBP_ECOLX
41 PsiBlast_CBE 48.4442% -97 - C3 -2FGK 6.9 HLYBP_ECOLX
63 PsiBlast_CBE 48.1035% -94 - C3 -3VX4 6.8 ?
45 PsiBlast_CBE 48.0145% -95 - C3 -5DGX 4.6
67 PsiBlast_CBE 45.5239% -92 - C3 -1MV5 6.7 LMRA_LACLA
89 PsiBlast_CBE 37.8634% -80 - C3 -4U00 4.5 ?
81 PsiBlast_CBE 35.4731% -81 - C3 -4YMV 4.5 ?
83 PsiBlast_CBE 34.6831% -82 - C3 -4YMU 5.0 ?
84 PsiBlast_CBE 34.3431% -87 - C3 -4YMU 4.7 ?
82 PsiBlast_CBE 33.7031% -82 - C3 -4YMV 3.8 ?