@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1354c: (2016-05-01 )
MCNDTATPQLEELVTTVANQLMTVDAATSAEVSQRVLAYLVEQLGVDVSFLRHNDRDRRATRLVAEWPPRLNIPDPDPLRLIYFADADPVFALCEHAKEPLVFRPEPATEDYQRLIEEARGVPVTSAAAVPLVSGEITTGLLGFIKFGDRKWHEAELNALMTIATLFAQVQARVAAEARLRYLADHDDLTGLHNRRALLQHLDQRLAPGQPGPVAALFLDLDRLKAINDYLGHAAGDQFIHVFAQRIGDALVGESLIARLGGDEFVLIPASPMSADAAQPLAERLRDQLKDHVAIGGEVLTRTVSIGVASGTPGQHTPSDLLRRADQAALAAKHAGGDSVAIFTADMSVSGELRNDIELHLRRGIESDALRLVYLPEVDLRTGDIVGTEALVRWQHPTRGLLAPGCFIPVAESINLAGELDRWVLRRACNEFSEWQSAGLGHDALLRINVSAGQLVTGGFVDFVADTIGQHGLDASSVCLEITENVVVQDLHTARATLARLKEVGVHIAIDDFGTGYSAISLLQTLPIDTLKIDKTFVRQLGTNTSDLVIVRGIMTLAEGFQLDVVAEGVETEAAARILLDQRCYRAQGFLFSRPVPGEAMRHMLSARRLPPTCIPATDPALS

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C2E_A_4(4RNH)
?
[Raw transfer]



C2E_A_4(4RNH)
?
[Raw transfer]



C2E_A_3(3N3T)
?
[Raw transfer]



C2E_A_3(4LJ3)
YAHA_ECOLI
[Raw transfer]



C2E_B_8(4LJ3)
YAHA_ECOLI
[Raw transfer]



C2E_A_3(4Y9Q)
?
[Raw transfer]



C2E_A_6(4Y9P)
?
[Raw transfer]



C2E_B_10(4Y9P)
?
[Raw transfer]



NACID_C_3(3U2E)
?
[Raw transfer]
-
C2E_A_4(3GFX)
?
[Raw transfer]



C2E_A_3(3GFZ)
?
[Raw transfer]



C2E_A_3(3GG0)
?
[Raw transfer]



C2E_A_3(3GFY)
?
[Raw transfer]



C2E_A_3(3GG1)
?
[Raw transfer]



C2E_B_7(3GFZ)
?
[Raw transfer]



C2E_B_7(3GFX)
?
[Raw transfer]



C2E_B_7(3GG1)
?
[Raw transfer]



C2E_B_7(3GG0)
?
[Raw transfer]



C2E_B_5(3GFY)
?
[Raw transfer]



EDO_A_11(4Q6J)
?
[Raw transfer]



PGE_A_4(4KIE)
YAHA_ECOLI
[Raw transfer]



PGE_A_4(4KIE)
YAHA_ECOLI
[Raw transfer]



EDO_A_7(4Q6J)
?
[Raw transfer]
76 HHSearch 94.1636%-117 - C3 -4RNH 8.5 ?
1 PsiBlast_PDB 91.9636%-116 - C3 -4RNH 8.5 ?
2 PsiBlast_PDB 89.1336%-114 - C3 -4RNF - ? -
78 HHSearch 74.3525% -97 - C2 -3PJX - ? -
80 HHSearch 73.2234%-119 * C3 *4HJF - ? -
5 PsiBlast_PDB 71.6139%-110 - C3 -2R6O - ? -
4 PsiBlast_PDB 71.4039%-117 - C3 -4RNJ - ? -
86 HHSearch 71.2137%-110 - C3 -2R6O - ? -
88 HHSearch 70.8036%-119 - C3 -3S83 - ? -
9 PsiBlast_PDB 70.1238%-123 - C3 -4HJF - ? -
10 PsiBlast_PDB 70.0538%-116 - C3 -3U2E 8.7 ?
3 PsiBlast_PDB 70.0039%-116 - C3 -4RNI - ? -
6 PsiBlast_PDB 69.9639%-110 - C3 -3N3T 8.7 ?
83 HHSearch 69.4337%-116 - C3 -4RNI - ? -
11 PsiBlast_PDB 68.7938%-121 - C3 -3S83 - ? -
7 PsiBlast_PDB 67.0135%-120 - C3 -4HU3 - DOSP_ECOLI -
91 HHSearch 66.9730%-113 - C3 -3SY8 - ? -
26 PsiBlast_CBE 66.5832%-109 - C3 -3SY8 - ? -
21 PsiBlast_CBE 65.0634%-111 - C3 -4LYK - YAHA_ECOLI -
18 PsiBlast_PDB 64.8631%-119 - C3 -4Y9N - ? -
90 HHSearch 63.2230%-111 - C3 -4Q6J 3.4 ?
28 PsiBlast_CBE 62.6831%-108 - C3 -4Y9P 8.1 ?
20 PsiBlast_PDB 61.7631%-116 - C3 -4Y9Q 8.5 ?
84 HHSearch 61.4631% -99 - C3 -4KIE 2.4 YAHA_ECOLI
19 PsiBlast_PDB 59.9731%-104 - C3 -4Y9P 7.5 ?
12 PsiBlast_PDB 59.0434%-103 - C3 -4KIE 2.4 YAHA_ECOLI
24 PsiBlast_CBE 58.4434%-110 - C3 -4LJ3 9.1 YAHA_ECOLI
13 PsiBlast_PDB 57.1434%-105 - C3 -4LJ3 8.9 YAHA_ECOLI
47 PsiBlast_CBE 37.6935% -80 - C3 -3GFX 3.1 ?
41 PsiBlast_CBE 33.9835% -77 - C3 -3GG0 5.1 ?
42 PsiBlast_CBE 32.8135% -87 - C3 -3GFZ 3.5 ?
43 PsiBlast_CBE 32.4035% -80 - C3 -3GFZ 5.7 ?
46 PsiBlast_CBE 32.3535% -84 - C3 -3GFX 3.8 ?
40 PsiBlast_CBE 31.6435% -88 - C3 -3GG0 4.6 ?
39 PsiBlast_CBE 31.5035% -80 - C3 -3GG1 4.1 ?
38 PsiBlast_CBE 29.3135% -83 - C3 -3GG1 3.6 ?
45 PsiBlast_CBE 25.1335% -68 - C3 -3GFY 3.5 ?
44 PsiBlast_CBE 23.1935% -69 - C3 -3GFY 3.5 ?