@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1394c: (2016-05-01 )
MATATTQRPLKGPAKRMSTWTMTREAITIGFDAGDGFLGRLRGSDITRFRCAGRRFVSISHPDYVDHVLHEARLKYVKSDEYGPIRATAGLNLLTDEGDSWARHRGALNSTFARRHLRGLVGLMIDPIADVTAARVPGAQFDMHQSMVETTLRVVANALFSQDFGPLVQSMHDLATRGLRRAEKLERLGLWGLMPRTVYDTLIWCIYSGVHLPPPLREMQEITLTLDRAINSVIDRRLAEPTNSADLLNVLLSADGGIWPRQRVRDEALTFMLAGHETTANAMSWFWYLMALNPQARDHMLTELDDVLGMRRPTADDLGKLAWTTACLQESQRYFSSVWIIAREAVDDDIIDGHRIRRGTTVVIPIHHIHHDPRWWPDPDRFDPGRFLRCPTDRPRCAYLPFGGGRRICIGQSFALMEMVLMAAIMSQHFTFDLAPGYHVELEATLTLRPKHGVHVIGRRR

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DMS_A_5(3WSP)
CPXB_BACME
[Raw transfer]



GOL_A_8(4HGG)
CPXB_BACME
[Raw transfer]



SYN_A_4(4HGG)
CPXB_BACME
[Raw transfer]



DMS_A_9(2J1M)
CPXB_BACME
[Raw transfer]



AER_A_4(4R1Z)
?
[Raw transfer]



AER_B_6(4R1Z)
?
[Raw transfer]



EDO_A_7(1BVY)
CPXB_BACME
[Raw transfer]



EDO_A_5(1BU7)
CPXB_BACME
[Raw transfer]
6 PsiBlast_PDB 93.0326%-104 - C7 -3NPL - CPXB_BACME -
14 PsiBlast_PDB 91.8125%-107 - C7 -3WSP 3.0 CPXB_BACME
20 PsiBlast_PDB 91.7125%-110 - C7 -4HGG 3.1 CPXB_BACME
8 PsiBlast_PDB 91.6825%-107 - C7 -2BMH - CPXB_BACME -
11 PsiBlast_PDB 91.1925%-105 - C7 -2J4S - CPXB_BACME -
5 PsiBlast_PDB 91.0125%-103 - C7 -1FAG - ? -
15 PsiBlast_PDB 90.6625%-104 - C7 -1ZO4 - CPXB_BACME -
9 PsiBlast_PDB 90.6625%-104 - C7 -1BU7 3.2 CPXB_BACME
12 PsiBlast_PDB 90.5425%-108 - C7 -3BEN - CPXB_BACME -
10 PsiBlast_PDB 90.5225%-107 - C7 -2J1M 2.9 CPXB_BACME
1 PsiBlast_PDB 90.2726%-101 - C7 -1ZOA - CPXB_BACME -
19 PsiBlast_PDB 90.2225%-103 - C7 -3M4V - CPXB_BACME -
2 PsiBlast_PDB 90.0925%-105 - C7 -1JPZ - CPXB_BACME -
4 PsiBlast_PDB 89.7825%-104 - C7 -2HPD - CPXB_BACME -
3 PsiBlast_PDB 88.8925%-103 - C7 -1ZO9 - CPXB_BACME -
13 PsiBlast_PDB 88.8225%-105 - C7 -1BVY 2.8 CPXB_BACME
7 PsiBlast_PDB 88.3625%-100 - C7 -4KPA - CPXB_BACME -
71 HHSearch 87.6024% -93 - C6 -2VE3 - CP120_SYNY3 -
18 PsiBlast_PDB 86.6725%-108 - C7 -3PSX - CPXB_BACME -
61 Fugue 85.5623% -95 - C6 -1JPZ - CPXB_BACME -
23 PsiBlast_CBE 42.5236% -92 - C7 -4R1Z 4.3 ?
24 PsiBlast_CBE 38.8636% -84 - C7 -4R1Z 3.1 ?