@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1511: (2016-05-02 )
MKRALITGITGQDGSYLAELLLAKGYEVHGLIRRASTFNTSRIDHLYVDPHQPGARLFLHYGDLIDGTRLVTLLSTIEPDEVYNLAAQSHVRVSFDEPVHTGDTTGMGSMRLLEAVRLSRVHCRFYQASSSEMFGASPPPQNELTPFYPRSPYGAAKVYSYWATRNYREAYGLFAVNGILFNHESPRRGETFVTRKITRAVARIKAGIQSEVYMGNLDAVRDWGYAPEYVEGMWRMLQTDEPDDFVLATGRGFTVREFARAAFEHAGLDWQQYVKFDQRYLRPTEVDSLIGDATKAAELLGWRASVHTDELARIMVDADMAALECEGKPWIDKPMIAGRT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_4(1N7H)
GMD2_ARATH
[Raw transfer]




NDP_B_5(1N7H)
GMD2_ARATH
[Raw transfer]




GDP_B_6(1N7H)
GMD2_ARATH
[Raw transfer]




NDP_A_3(1N7H)
GMD2_ARATH
[Raw transfer]




NDP_A_3(1N7H)
GMD2_ARATH
[Raw transfer]




TDX_H_8(1KEP)
RMLB_STRMU
[Raw transfer]




25 PsiBlast_CBE 96.4456% -89 - C1 -1T2A - GMDS_HUMAN -
27 PsiBlast_CBE 96.0556% -88 - C1 -1T2A - GMDS_HUMAN -
26 PsiBlast_CBE 95.6756% -87 - C1 -1T2A - GMDS_HUMAN -
4 PsiBlast_PDB 95.6056% -88 - C1 -1T2A - GMDS_HUMAN -
103 HHSearch 95.5161% -81 - C1 -1N7H 12.0 GMD2_ARATH
1 PsiBlast_PDB 95.1561% -83 - C1 -1N7G - GMD2_ARATH -
2 PsiBlast_PDB 94.5561% -83 - C1 -1N7H 12.0 GMD2_ARATH
21 PsiBlast_CBE 94.4061% -84 - C1 -1N7H 11.9 GMD2_ARATH
23 PsiBlast_CBE 94.0561% -84 - C1 -1N7G - GMD2_ARATH -
24 PsiBlast_CBE 92.8661% -81 - C1 -1N7G - GMD2_ARATH -
22 PsiBlast_CBE 90.4461% -82 - C1 -1N7G - GMD2_ARATH -
6 PsiBlast_PDB 90.4450% -81 - C1 -2Z95 - ? -
29 PsiBlast_CBE 90.4150% -79 - C1 -2Z1M - ? -
98 HHSearch 89.9154% -73 - C1 -1RPN - GM4D_PSEAE -
5 PsiBlast_PDB 89.7750% -79 - C1 -2Z1M - ? -
32 PsiBlast_CBE 89.2753% -76 - C1 -1RPN - GM4D_PSEAE -
104 HHSearch 88.9056% -76 - C1 -1DB3 - GM4D_ECOLI -
7 PsiBlast_PDB 88.8853% -77 - C1 -1RPN - GM4D_PSEAE -
30 PsiBlast_CBE 88.6153% -77 - C1 -1RPN - GM4D_PSEAE -
31 PsiBlast_CBE 88.3853% -75 - C1 -1RPN - GM4D_PSEAE -