@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1569: (2016-05-03 )
MKAATQARIDDSPLAWLDAVQRQRHEAGLRRCLRPRPAVATELDLASNDYLGLSRHPAVIDGGVQALRIWGAGATGSRLVTGDTKLHQQFEAELAEFVGAAAGLLFSSGYTANLGAVVGLSGPGSLLVSDARSHASLVDACRLSRARVVVTPHRDVDAVDAALRSRDEQRAVVVTDSVFSADGSLAPVRELLEVCRRHGALLLVDEAHGLGVRGGGRGLLYELGLAGAPDVVMTTTLSKALGSQGGVVLGPTPVRAHLIDAARPFIFDTGLAPAAVGAARAALRVLQAEPWRPQAVLNHAGELARMCGVAAVPDSAMVSVILGEPESAVAAAAACLDAGVKVGCFRPPTVPAGTSRLRLTARASLNAGELELARRVLTDVLAVARR

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLS_A_2(2W8J)
?
[Raw transfer]



PLS_A_2(2W8W)
?
[Raw transfer]



KAM_A_5(1DJ9)
BIOF_ECOLI
[Raw transfer]



PMP_A_2(2XBN)
?
[Raw transfer]



PLP_A_5(1DJE)
BIOF_ECOLI
[Raw transfer]



PLP_A_3(3TQX)
?
[Raw transfer]



PLP_A_3(3A2B)
?
[Raw transfer]



PLP_A_3(3A2B)
?
[Raw transfer]



LLF_A_3(2G6W)
BIOF_ECOLI
[Raw transfer]



MYB_A_4(4BMK)
?
[Raw transfer]



MYB_B_8(4BMK)
?
[Raw transfer]



AKB_A_3(1FC4)
KBL_ECOLI
[Raw transfer]
1 PsiBlast_PDB 97.2976%-111 - C1 -3WY7 - BIOF_MYCS2 -
69 HHSearch 96.1276%-110 - C1 -3WY7 - BIOF_MYCS2 -
75 HHSearch 78.3531%-101 - C1 -2BWN - HEM1_RHOCB -
14 PsiBlast_PDB 77.5235% -96 - C1 -1BS0 - BIOF_ECOLI -
15 PsiBlast_PDB 76.9035% -96 - C1 -2G6W 3.4 BIOF_ECOLI
71 HHSearch 76.8325% -97 - C1 -3KKI - CQSA_VIBCH -
17 PsiBlast_PDB 76.5935% -99 - C1 -1DJE 4.8 BIOF_ECOLI
77 HHSearch 75.8635% -94 - C1 -1BS0 - BIOF_ECOLI -
72 HHSearch 75.7634% -99 - C1 -2W8T - ? -
90 Fugue 75.1932% -92 - C1 -1BS0 - BIOF_ECOLI -
74 HHSearch 74.6430% -97 * C1 *3A2B 3.1 ?
16 PsiBlast_PDB 74.4535% -98 - C1 -1DJ9 4.8 BIOF_ECOLI
7 PsiBlast_PDB 74.4336%-100 - C1 -2W8U - ? -
70 HHSearch 74.3527%-102 - C1 -4IW7 - ? -
12 PsiBlast_PDB 73.5630%-101 - C1 -3A2B 3.2 ?
9 PsiBlast_PDB 73.5036% -99 - C1 -2W8V - ? -
5 PsiBlast_PDB 73.3836% -99 - C1 -2XBN 4.0 ?
4 PsiBlast_PDB 73.3036% -99 - C1 -2W8J 5.0 ?
2 PsiBlast_PDB 72.8036% -98 - C1 -2JG2 - ? -
8 PsiBlast_PDB 72.6336% -98 - C1 -2W8T - ? -
6 PsiBlast_PDB 71.8736% -96 - C1 -2W8W 4.3 ?
10 PsiBlast_PDB 71.0836% -95 - C1 -4BMK 3.9 ?
13 PsiBlast_PDB 70.3631% -91 - C1 -3TQX 3.8 ?
21 PsiBlast_CBE 70.0036%-101 - C1 -4BMK 2.2 ?