@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1617: (2016-05-03 )
MTRRGKIVCTLGPATQRDDLVRALVEAGMDVARMNFSHGDYDDHKVAYERVRVASDATGRAVGVLADLQGPKIRLGRFASGATHWAEGETVRITVGACEGSHDRVSTTYKRLAQDAVAGDRVLVDDGKVALVVDAVEGDDVVCTVVEGGPVSDNKGISLPGMNVTAPALSEKDIEDLTFALNLGVDMVALSFVRSPADVELVHEVMDRIGRRVPVIAKLEKPEAIDNLEAIVLAFDAVMVARGDLGVELPLEEVPLVQKRAIQMARENAKPVIVATQMLDSMIENSRPTRAEASDVANAVLDGADALMLSGETSVGKYPLAAVRTMSRIICAVEENSTAAPPLTHIPRTKRGVISYAARDIGERLDAKALVAFTQSGDTVRRLARLHTPLPLLAFTAWPEVRSQLAMTWGTETFIVPKMQSTDGMIRQVDKSLLELARYKRGDLVVIVAGAPPGTVGSTNLIHVHRIGEDDV

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEP_B_10(4HYV)
KPYK1_TRYBB
[Raw transfer]




PEP_A_5(4HYV)
KPYK1_TRYBB
[Raw transfer]




MLT_B_9(4KCU)
KPYK1_TRYBB
[Raw transfer]




CIT_B_5(3MA8)
?
[Raw transfer]




MLT_A_5(4KCU)
KPYK1_TRYBB
[Raw transfer]




AKG_B_5(4KCV)
KPYK1_TRYBB
[Raw transfer]




GOL_B_12(4KCW)
KPYK1_TRYBB
[Raw transfer]




GOL_B_12(4DRS)
?
[Raw transfer]




GOL_A_4(4KRZ)
?
[Raw transfer]




GOL_B_6(4KRZ)
?
[Raw transfer]




CIT_A_3(3MA8)
?
[Raw transfer]




GOL_A_5(4DRS)
?
[Raw transfer]




GOL_A_5(4DRS)
?
[Raw transfer]




AKG_A_11(4KCV)
KPYK1_TRYBB
[Raw transfer]




GOL_A_12(4KCT)
KPYK1_TRYBB
[Raw transfer]




GOL_B_10(3PP7)
KPYK_LEIME
[Raw transfer]




GOL_B_7(4KCT)
KPYK1_TRYBB
[Raw transfer]




GOL_D_3(3HQN)
KPYK_LEIME
[Raw transfer]




GOL_B_7(4KCT)
KPYK1_TRYBB
[Raw transfer]




PGA_A_3(1A3W)
KPYK1_YEAST
[Raw transfer]




33 PsiBlast_CBE 95.0240% -97 - C8 -4YNG - KPYK1_ECOLI -
35 PsiBlast_CBE 94.9240% -98 - C8 -4YNG - KPYK1_ECOLI -
34 PsiBlast_CBE 94.9040% -95 - C8 -4YNG - KPYK1_ECOLI -
31 PsiBlast_CBE 94.6440% -98 - C8 -4YNG - KPYK1_ECOLI -
144 HHSearch 94.5639%-100 - C8 -3T05 - KPYK_STAAR -
159 Fugue 94.2340% -99 - C8 -1PKY - KPYK1_ECOLI -
6 PsiBlast_PDB 94.1839% -97 - C8 -1PKY - KPYK1_ECOLI -
5 PsiBlast_PDB 94.0940% -92 - C8 -4YNG - KPYK1_ECOLI -
30 PsiBlast_CBE 94.0140% -97 - C8 -4YNG - KPYK1_ECOLI -
32 PsiBlast_CBE 93.7840% -94 - C8 -4YNG - KPYK1_ECOLI -
146 HHSearch 93.6143% -91 - C8 -2E28 - KPYK_GEOSE -
27 PsiBlast_CBE 93.4738% -99 - C8 -3T05 - KPYK_STAAR -
28 PsiBlast_CBE 93.2838% -99 - C8 -3T05 - KPYK_STAAR -
2 PsiBlast_PDB 93.2638%-100 - C8 -3T05 - KPYK_STAAR -
25 PsiBlast_CBE 93.1238% -98 - C8 -3T07 - KPYK_STAAR -
29 PsiBlast_CBE 93.0338% -99 - C8 -3T05 - KPYK_STAAR -
24 PsiBlast_CBE 92.9238% -98 - C8 -3T07 - KPYK_STAAR -
22 PsiBlast_CBE 92.8838% -98 - C8 -3T0T - KPYK_STAAR -
21 PsiBlast_CBE 92.7238% -98 - C8 -3T0T - KPYK_STAAR -
4 PsiBlast_PDB 92.4838% -98 - C8 -3T0T - KPYK_STAAR -
101 PsiBlast_CBE 90.5634% -98 * C8 *3MA8 4.3 ?
141 HHSearch 90.3035%-103 - C8 -4DRS 1.7 ?
99 PsiBlast_CBE 90.1534%-102 - C8 -4DRS 2.2 ?
100 PsiBlast_CBE 89.3234%-102 - C8 -4DRS 1.7 ?
140 HHSearch 89.1235% -92 - C8 -4KCT 2.6 KPYK1_TRYBB
102 PsiBlast_CBE 88.8734% -96 - C8 -3MA8 4.5 ?
143 HHSearch 86.9135% -93 - C8 -1A3W 2.5 KPYK1_YEAST
10 PsiBlast_PDB 86.7737% -87 - C8 -3HQN 3.3 KPYK_LEIME
36 PsiBlast_CBE 86.5237% -88 - C8 -3PP7 2.3 KPYK_LEIME
108 PsiBlast_CBE 84.8639% -92 - C8 -4KRZ 3.4 ?
107 PsiBlast_CBE 84.6339% -92 - C8 -4KRZ 2.5 ?
126 PsiBlast_CBE 83.0838% -87 - C8 -4KCT 2.7 KPYK1_TRYBB
121 PsiBlast_CBE 82.9538% -85 - C8 -4KCV 3.0 KPYK1_TRYBB
124 PsiBlast_CBE 82.9138% -87 - C8 -4KCU 3.5 KPYK1_TRYBB
119 PsiBlast_CBE 82.6938% -85 - C8 -4KCW 3.3 KPYK1_TRYBB
130 PsiBlast_CBE 82.5338% -85 - C8 -4HYV 2.9 KPYK1_TRYBB
125 PsiBlast_CBE 82.4838% -85 - C8 -4KCT 2.6 KPYK1_TRYBB
122 PsiBlast_CBE 82.1738% -84 - C8 -4KCV 3.1 KPYK1_TRYBB
129 PsiBlast_CBE 82.0838% -84 - C8 -4HYV 3.6 KPYK1_TRYBB
123 PsiBlast_CBE 81.8638% -87 - C8 -4KCU 3.1 KPYK1_TRYBB