@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1633: (2016-05-03 )
MRAGGHFEVVSPHAPAGDQPAAIDELERRINAGERDVVLLGATGTGKSATTAWLIERLQRPTLVMAPNKTLAAQLANELREMLPHNAVEYFVSYYDYYQPEAYIAQTDTYIEKDSSINDDVERLRHSATSALLSRRDVVVVASVSCIYGLGTPQSYLDRSVELKVGEEVPRDGLLRLLVDVQYTRNDMSFTRGSFRVRGDTVEIIPSYEELAVRIEFFGDEIEALYYLHPLTGEVIRQVDSLRIFPATHYVAGPERMAHAVSAIEEELAERLAELESQGKLLEAQRLRMRTNYDIEMMRQVGFCSGIENYSRHIDGRGPGTPPATLLDYFPEDFLLVIDESHVTVPQIGGMYEGDISRKRNLVEYGFRLPSACDNRPLTWEEFADRIGQTVYLSATPGPYELSQTGGEFVEQVIRPTGLVDPKVVVKPTKGQIDDLIGEIRTRADADQRVLVTTLTKKMAEDLTDYLLEMGIRVRYLHSEVDTLRRVELLRQLRLGDYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSSRSLIQTIGRAARNVSGEVHMYADKITDSMREAIDETERRRAKQIAYNEANGIDPQPLRKKIADILDQVYREADDTAVVEVGGSGRNASRGRRAQGEPGRAVSAGVFEGRDTSAMPRAELADLIKDLTAQMMAAARDLQFELAARFRDEIADLKRELRGMDAAGLK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_6(4A4Z)
SKI2_YEAST
[Raw transfer]



FLQ_C_5(2FDC)
UVRB_BACCA
[Raw transfer]



NACID_C_1(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_2(2FDC)
UVRB_BACCA
[Raw transfer]
-
NACID_D_1(2NMV)
?
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
NACID_D_1(2D7D)
UVRB_BACSU
[Raw transfer]
-
CHAIN_D_4(3V4R)
UVRB_BACSU
[Raw transfer]
-
CHAIN_C_3(3V4R)
?
[Raw transfer]
-
45 HHSearch 89.1959% -95 - C2 -2D7D 8.8 UVRB_BACSU
22 PsiBlast_CBE 88.9360% -98 - C2 -1T5L - UVRB_BACCA -
6 PsiBlast_PDB 88.4057% -97 - C2 -2D7D 8.8 UVRB_BACSU
3 PsiBlast_PDB 87.7360% -97 - C2 -1T5L - UVRB_BACCA -
2 PsiBlast_PDB 86.7560% -96 - C2 -3UWX - ? -
7 PsiBlast_PDB 86.7357% -97 - C2 -2NMV 7.5 ?
21 PsiBlast_CBE 85.1560% -97 - C2 -2FDC 18.0 UVRB_BACCA
37 Fugue 85.1465% -85 - C2 -1D9X - UVRB_BACCA -
8 PsiBlast_PDB 83.4757% -99 - C2 -3V4R 10.7 UVRB_BACSU
5 PsiBlast_PDB 83.1160% -86 - C2 -1D9X - UVRB_BACCA -
4 PsiBlast_PDB 83.0860% -83 - C2 -1D9Z - UVRB_BACCA -
23 PsiBlast_CBE 83.0057% -98 - C2 -3V4R 13.1 ?
35 Fugue 82.4760% -90 - C2 -1D2M - UVRB_THET8 -
1 PsiBlast_PDB 75.9160% -88 - C2 -2FDC 12.2 UVRB_BACCA
36 Fugue 65.5060% -81 - C2 -1D9X - UVRB_BACCA -
38 Fugue 50.3817% -68 - C2 -3HJH - MFD_ECOLI -
47 HHSearch 49.5219% -67 - C2 -3HJH - MFD_ECOLI -
48 HHSearch 48.2419% -65 - C2 -2EYQ - MFD_ECOLI -
39 Fugue 46.5619% -42 - C2 -2EYQ - MFD_ECOLI -
42 Fugue 42.0460% -48 - C2 -1D9X - UVRB_BACCA -