@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1715: (2016-05-04 )
MLTSHGFSRAAVVGAGLMGRRIAGVLASAGLDVAITDTNAEILHAAAVEAARVAGAGRGSVAAAADLAAAIPDADLVIEAVVENLAVKQELFERLATLAPDAVLATNTSVLPIGAVTERVEDGSRVIGTHFWNPPDLIPVVEVVPSARTAPDTADRVVALLTQVGKLPVRVGRDVPGFIGNRLQHALWREAIALVAEGVCDPKTVDLVVRNTIGLRLATLGPLENADYIGLDLTLAIHDAVIPSLNHDPHPSPLLRELVAAGQLGARTGHGFLDWPAGAREATTARLAQHIAAQLQANEKGRGT

Atome Classification :

(38 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_F_6(1F0Y)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1M76)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1F0Y)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1IL0)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1M75)
HCDH_HUMAN
[Raw transfer]




NAD_F_6(1M76)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1IL0)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(1F0Y)
HCDH_HUMAN
[Raw transfer]




NAD_D_4(1LSJ)
HCDH_HUMAN
[Raw transfer]




NAD_F_6(1M75)
HCDH_HUMAN
[Raw transfer]




NAI_A_3(1F17)
HCDH_HUMAN
[Raw transfer]




NAI_B_4(1F17)
HCDH_HUMAN
[Raw transfer]




NAD_D_4(1LSO)
HCDH_HUMAN
[Raw transfer]




NAD_B_4(3HAD)
HCDH_HUMAN
[Raw transfer]




NAD_E_5(3HDH)
HCDH_PIG
[Raw transfer]




NAD_A_5(4KUG)
?
[Raw transfer]




NAD_A_3(3HAD)
HCDH_HUMAN
[Raw transfer]




NAD_F_6(1IL0)
HCDH_HUMAN
[Raw transfer]




NAD_F_6(3HDH)
HCDH_PIG
[Raw transfer]




NAD_C_3(1LSO)
HCDH_HUMAN
[Raw transfer]




NAD_C_3(1LSJ)
HCDH_HUMAN
[Raw transfer]




NAD_D_8(4KUG)
?
[Raw transfer]




101 HHSearch 90.1636% -94 - C3 -1F0Y 9.6 HCDH_HUMAN
97 HHSearch 89.5133% -95 - C3 -4J0E - HCDH1_CAEEL -
100 HHSearch 89.4137% -91 - C3 -3MOG - PAAH_ECOLI -
102 HHSearch 89.0734% -94 * C3 *4R1N - ? -
42 PsiBlast_CBE 88.3437% -93 - C3 -3MOG - PAAH_ECOLI -
89 Fugue 88.3035% -98 - C3 -1IL0 9.7 HCDH_HUMAN
9 PsiBlast_PDB 88.2933%-101 - C3 -4R1N - ? -
7 PsiBlast_PDB 88.2333%-100 - C3 -4KUG 8.8 ?
105 HHSearch 87.9330% -94 - C3 -4B3H - ? -
10 PsiBlast_PDB 87.2833%-100 - C3 -4KUH - ? -
33 PsiBlast_CBE 87.0333% -97 - C3 -4KUH - ? -
27 PsiBlast_CBE 86.9533%-102 - C3 -4KUG - ? -
8 PsiBlast_PDB 86.7633%-100 - C3 -4KUE - ? -
106 HHSearch 86.2931% -94 - C3 -1ZCJ - ECHP_RAT -
39 PsiBlast_CBE 86.1234%-100 - C3 -1M76 9.6 HCDH_HUMAN
28 PsiBlast_CBE 86.1233%-101 - C3 -4KUG - ? -
109 HHSearch 85.9831% -92 - C3 -3ZWC - ECHP_RAT -
4 PsiBlast_PDB 85.9534%-105 - C3 -1F14 - HCDH_HUMAN -
30 PsiBlast_CBE 85.9233%-100 - C3 -4KUH - ? -
17 PsiBlast_PDB 85.7437% -91 - C3 -3MOG - PAAH_ECOLI -
41 PsiBlast_CBE 85.6134%-102 - C3 -1M75 9.1 HCDH_HUMAN
12 PsiBlast_PDB 85.3934%-104 - C3 -1LSJ 7.0 HCDH_HUMAN
15 PsiBlast_PDB 84.6934% -99 - C3 -1LSO 9.6 HCDH_HUMAN
25 PsiBlast_CBE 84.5434% -98 - C3 -1F0Y 9.9 HCDH_HUMAN
26 PsiBlast_CBE 84.5133% -97 - C3 -4KUG 8.7 ?
16 PsiBlast_PDB 84.4334% -97 - C3 -1M75 8.7 HCDH_HUMAN
13 PsiBlast_PDB 84.3834%-102 - C3 -3HAD 8.7 HCDH_HUMAN
11 PsiBlast_PDB 84.3234% -99 - C3 -1IL0 9.7 HCDH_HUMAN
5 PsiBlast_PDB 84.1434%-101 - C3 -1F17 9.0 HCDH_HUMAN
36 PsiBlast_CBE 84.0134% -99 - C3 -1LSJ 7.7 HCDH_HUMAN
14 PsiBlast_PDB 83.9234% -99 - C3 -1M76 9.8 HCDH_HUMAN
40 PsiBlast_CBE 83.7634%-104 - C3 -1LSO 9.0 HCDH_HUMAN
38 PsiBlast_CBE 83.6234%-104 - C3 -3HAD 9.4 HCDH_HUMAN
6 PsiBlast_PDB 83.3534% -99 - C3 -1F0Y 9.6 HCDH_HUMAN
37 PsiBlast_CBE 83.2634% -97 - C3 -1IL0 9.0 HCDH_HUMAN
23 PsiBlast_CBE 82.8934%-102 - C3 -1F17 8.8 HCDH_HUMAN
2 PsiBlast_PDB 82.4934%-102 - C3 -3HDH 9.2 HCDH_PIG
22 PsiBlast_CBE 80.4034% -98 - C3 -3HDH 8.6 HCDH_PIG