@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1821: (2016-05-05 )
MNVHGCPRIAACRCTDTHPRGRPAFAYRWFVPKTTRAQPGRLSSRFWRLLGASTEKNRSRSLADVTASAEYDKEAADLSDEKLRKAAGLLNLDDLAESADIPQFLAIAREAAERRTGLRPFDVQLLGALRMLAGDVIEMATGEGKTLAGAIAAAGYALAGRHVHVVTINDYLARRDAEWMGPLLDAMGLTVGWITADSTPDERRTAYDRDVTYASVNEIGFDVLRDQLVTDVNDLVSPNPDVALIDEADSVLVDEALVPLVLAGTTHRETPRLEIIRLVAELVGDKDADEYFATDSDNRNVHLTEHGARKVEKALGGIDLYSEEHVGTTLTEVNVALHAHVLLQRDVHYIVRDDAVHLINASRGRIAQLQRWPDGLQAAVEAKEGIETTETGEVLDTITVQALINRYATVCGMTGTALAAGEQLRQFYQLGVSPIPPNKPNIREDEADRVYITTAAKNDGIVEHITEVHQRGQPVLVGTRDVAESEELHERLVRRGVPAVVLNAKNDAEEARVIAEAGKYGAVTVSTQMAGRGTDIRLGGSDEADHDRVAELGGLHVVGTGRHHTERLDNQLRGRAGRQGDPGSSVFFSSWEDDVVAANLDHNKLPMATDENGRIVSPRTGSLLDHAQRVAEGRLLDVHANTWRYNQLIAQQRAIIVERRNTLLRTVTAREELAELAPKRYEELSDKVSEERLETICRQIMLYHLDRGWADHLAYLADIRESIHLRALGRQNPLDEFHRMAVDAFASLAADAIEAAQQTFETANVLDHEPGLDLSKLARPTSTWTYMVNDNPLSDDTLSALSLPGVFR

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_3(1TF2)
SECA_BACSU
[Raw transfer]



ADP_A_2(4YS0)
SECA_THEMA
[Raw transfer]



ADP_A_2(4YS0)
SECA_THEMA
[Raw transfer]



ADP_A_8(1M74)
SECA_BACSU
[Raw transfer]



ADP_A_3(3JUX)
SECA_THEMA
[Raw transfer]



ADP_B_8(3BXZ)
SECA_ECOLI
[Raw transfer]



ADP_A_7(3BXZ)
SECA_ECOLI
[Raw transfer]
41 HHSearch 81.7737% -69 - C6 -1TF5 - SECA_BACSU -
39 HHSearch 81.5236% -68 - C6 -1NKT - SECA1_MYCTU -
42 HHSearch 80.1437% -69 - C6 -4YS0 6.8 SECA_THEMA
38 HHSearch 79.4038% -63 - C6 -2IPC - SECA_THET8 -
7 PsiBlast_PDB 79.0536% -74 - C6 -1TF5 - SECA_BACSU -
27 Fugue 78.4635% -60 - C6 -1M6N - SECA_BACSU -
6 PsiBlast_PDB 77.3036% -71 - C6 -1TF2 6.0 SECA_BACSU
21 PsiBlast_CBE 77.1636% -69 - C6 -3JV2 - SECA_BACSU -
8 PsiBlast_PDB 76.6136% -69 - C6 -3JV2 - SECA_BACSU -
24 PsiBlast_CBE 76.5238% -68 - C6 -1NKT - SECA1_MYCTU -
12 PsiBlast_PDB 75.7536% -64 - C6 -2VDA - SECA_ECOLI -
3 PsiBlast_PDB 75.5636% -67 - C6 -1M74 5.1 SECA_BACSU
2 PsiBlast_PDB 75.5636% -68 - C6 -1M6N - SECA_BACSU -
17 PsiBlast_PDB 75.4135% -72 - C6 -4YS0 6.9 SECA_THEMA
19 PsiBlast_PDB 75.2638% -67 - C6 -1NKT - SECA1_MYCTU -
10 PsiBlast_PDB 75.1036% -67 - C6 -3IQY - SECA_BACSU -
18 PsiBlast_PDB 75.0235% -67 - C6 -3JUX 5.5 SECA_THEMA
40 HHSearch 74.1338% -65 - C6 -2FSF - SECA_ECOLI -
9 PsiBlast_PDB 73.7536% -67 - C6 -3IQM - SECA_BACSU -
5 PsiBlast_PDB 73.6236% -64 - C6 -2IBM - SECA_BACSU -
26 PsiBlast_CBE 43.4139% -39 - C6 -3BXZ 1.9 SECA_ECOLI
25 PsiBlast_CBE 43.0639% -43 - C6 -3BXZ 2.8 SECA_ECOLI