@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1882c: (2016-05-05 )
MKAIFITGAGSGMGREGATLFHANGWRVGAIDRNEDGLAALRVQLGAERLWARAVDVTDKAALEGALADFCAGNVGGGLDMMWNNAGIGEGGWFEDVPYEAAVRVVDVNFKAVLTGAYAALPYLKKAPGSLMFSTSSSSGTYGMPRIAVYSATKHAVKGLTEALSVEWQRHGVRVADVLPGLIDTAILTSTRQHSDEGPYTISAEQIRAAAPKKGMFRLMPSSSVAEAAWRAYQHPTRLHWYVPRSIRWIDRLKGVSPEFVRRHIAKSLATLEPKRK

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_C_9(4FN4)
?
[Raw transfer]




NAI_A_5(4NBU)
?
[Raw transfer]




NAD_D_12(4FN4)
?
[Raw transfer]




NAD_A_5(4FN4)
?
[Raw transfer]




NAD_B_7(4FN4)
?
[Raw transfer]




C0R_A_5(1Y5R)
DHI1_MOUSE
[Raw transfer]




C0R_B_6(1Y5R)
DHI1_MOUSE
[Raw transfer]




TNE_D_4(1IPF)
TRN2_DATST
[Raw transfer]




OCT_A_9(1Y5M)
DHI1_MOUSE
[Raw transfer]




THJ_A_4(3GED)
?
[Raw transfer]




3 PsiBlast_PDB 89.1830% -86 * C1 *4NBU 10.4 ?
20 PsiBlast_PDB 83.8733% -68 - C1 -2JAP - ? -
54 PsiBlast_CBE 83.2133% -67 - C1 -2JAP - ? -
55 PsiBlast_CBE 81.6533% -67 - C1 -2JAP - ? -
112 HHSearch 81.6426% -75 - C1 -2CFC - HCDR_XANP2 -
56 PsiBlast_CBE 80.9333% -66 - C1 -2JAP - ? -
126 Fugue 79.8524% -74 - C1 -1XSE - DHI1_CAVPO -
116 HHSearch 75.2927% -81 - C1 -3GAF - ? -
16 PsiBlast_PDB 74.4632% -71 - C1 -2RHR - ACT3_STRCO -
108 HHSearch 74.2224% -67 - C1 -3WDS - ? -
17 PsiBlast_PDB 73.1432% -71 - C1 -3CSD - ACT3_STRCO -
75 PsiBlast_CBE 73.1032% -79 - C1 -4I5E - ? -
114 HHSearch 73.0426% -72 - C1 -3D3W - DCXR_HUMAN -
79 PsiBlast_CBE 73.0032% -79 - C1 -4I5E - ? -
74 PsiBlast_CBE 72.4632% -76 - C1 -4BMS - ? -
104 HHSearch 72.3126% -64 - C1 -2AG5 - BDH2_HUMAN -
42 PsiBlast_CBE 72.2432% -68 - C1 -4DC1 - ACT3_STRCO -
41 PsiBlast_CBE 72.2232% -69 - C1 -1W4Z - ACT3_STRCO -
80 PsiBlast_CBE 72.0332% -79 - C1 -4I5E - ? -
70 PsiBlast_CBE 72.0332% -77 - C1 -4BMS - ? -
61 PsiBlast_CBE 69.4231% -60 - C1 -4FN4 11.6 ?
62 PsiBlast_CBE 68.0231% -61 - C1 -4FN4 11.4 ?
59 PsiBlast_CBE 66.3731% -60 - C1 -4FN4 11.5 ?
67 PsiBlast_CBE 64.9534% -74 - C1 -1Y5R 4.4 DHI1_MOUSE
60 PsiBlast_CBE 64.7331% -60 - C1 -4FN4 11.6 ?
69 PsiBlast_CBE 64.6634% -76 - C1 -1Y5M 2.9 DHI1_MOUSE
66 PsiBlast_CBE 64.2234% -73 - C1 -1Y5R 3.8 DHI1_MOUSE
92 PsiBlast_CBE 59.3231% -69 - C1 -1IPF 3.3 TRN2_DATST