@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2038c: (2016-05-07 )
MASVSFEQATRRYPGTDRPALDRLDLIVGDGEFVVLVGPSGCGKTTSLRMVAGLETLDCGRIRIGERDVTEVDPKDRDVAMVFQNYALYPHMTVAQNMGFALKVAKIGKAEIRERVLAAAKLLDLQSYLDRKPKDLSGGQRQRVAMGRAIVRRPQVFLMDEPLSNLDAKLRGQTRNQIAALQRQLGTTTVYVTHDQVEAMTMGDRVAVLSDGVLQQCASPRELYRNPGNVFVAGFIGSPAMNLFRLSIADSTVSLGDWQILLPRAVVGTAAEVIIGVRPEHLELGGAGIEMDVDMVEELGADAYLYGRIVSGGCEMDQSIVARVDGRGPPERGSRVRLCPTPGHLHFFAVDGRRIPG

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ADP_B_9(4HLU)
ECFA2_THEMA
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




ANP_A_6(4ZIR)
ECFA2_THEMA
[Raw transfer]




ADP_A_5(4HLU)
ECFA2_THEMA
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]




1 PsiBlast_PDB 94.9250%-122 - C1 -4TQU - ? -
3 PsiBlast_PDB 94.8150%-122 - C1 -4XIG - ? -
4 PsiBlast_PDB 94.4050%-122 - C1 -4XTC - ? -
2 PsiBlast_PDB 93.3750%-120 - C1 -4TQV - ? -
107 HHSearch 93.3050%-125 - C1 -4TQU - ? -
108 HHSearch 90.6249%-126 - C1 -1V43 - ? -
6 PsiBlast_PDB 89.6747%-126 - C1 -1V43 - ? -
5 PsiBlast_PDB 88.2547%-126 - C1 -1VCI - ? -
15 PsiBlast_PDB 85.5044%-116 - C1 -3PUV - MALK_ECOLI -
13 PsiBlast_PDB 85.0644%-115 - C1 -3PUZ - MALK_ECOLI -
18 PsiBlast_PDB 85.0444%-116 - C1 -3RLF - MALK_ECOLI -
22 PsiBlast_CBE 84.6444%-113 - C1 -4KI0 - MALK_ECOLI -
24 PsiBlast_CBE 84.5344%-115 - C1 -3PUZ - MALK_ECOLI -
110 HHSearch 84.4945%-118 - C1 -2YYZ - ? -
21 PsiBlast_CBE 84.1644%-115 - C1 -4KI0 - MALK_ECOLI -
16 PsiBlast_PDB 84.1444%-114 - C1 -3PUW - MALK_ECOLI -
113 HHSearch 84.0546%-109 - C1 -3RLF - MALK_ECOLI -
17 PsiBlast_PDB 83.9944%-114 - C1 -3PUX - MALK_ECOLI -
29 PsiBlast_CBE 83.9444%-111 - C1 -2AWN - MALK_ECOLI -
109 HHSearch 83.7540%-118 - C1 -2IT1 - ? -
49 PsiBlast_CBE 58.6639%-106 - C1 -3FVQ 6.4 FBPC_NEIG1
50 PsiBlast_CBE 57.7839%-104 - C1 -3FVQ 5.2 FBPC_NEIG1
91 PsiBlast_CBE 53.4132% -95 - C1 -3TIF 6.2 Y796_METJA
90 PsiBlast_CBE 52.4332% -99 - C1 -3TIF 6.4 Y796_METJA
73 PsiBlast_CBE 52.2334% -95 - C1 -3C41 3.9 ?
68 PsiBlast_CBE 51.4134% -89 - C1 -2OLK 4.0 ?
70 PsiBlast_CBE 51.0034% -90 - C1 -2OLK 3.9 ?
72 PsiBlast_CBE 50.7434% -93 - C1 -2OLJ 3.8 ?
74 PsiBlast_CBE 50.5234% -93 - C1 -3C41 5.2 ?
67 PsiBlast_CBE 50.1234% -92 - C1 -2OLK 4.0 ?
89 PsiBlast_CBE 50.1133% -94 - C1 -1L2T 4.6 Y796_METJA
59 PsiBlast_CBE 50.0834% -93 - C1 -3C4J 3.8 ?
61 PsiBlast_CBE 49.8934% -89 - C1 -2Q0H 3.6 ?
60 PsiBlast_CBE 49.7634% -90 - C1 -3C4J 4.9 ?
69 PsiBlast_CBE 49.2434% -91 - C1 -2OLK 3.7 ?
62 PsiBlast_CBE 49.1734% -92 - C1 -2Q0H 3.4 ?
55 PsiBlast_CBE 48.9938% -85 - C1 -4YMV 4.0 ?
56 PsiBlast_CBE 48.8138% -82 - C1 -4YMV 5.6 ?
88 PsiBlast_CBE 48.2633% -96 - C1 -1L2T 4.8 Y796_METJA
71 PsiBlast_CBE 48.0334% -88 - C1 -2OLJ 3.8 ?
57 PsiBlast_CBE 47.9138% -86 - C1 -4YMU 4.9 ?
58 PsiBlast_CBE 47.7638% -85 - C1 -4YMU 4.4 ?
79 PsiBlast_CBE 47.0032% -87 - C1 -4U00 4.2 ?
94 PsiBlast_CBE 35.6331% -72 - C1 -1B0U 3.7 HISP_SALTY
96 PsiBlast_CBE 34.8532% -78 - C1 -4HLU 4.4 ECFA2_THEMA
97 PsiBlast_CBE 34.7432% -80 - C1 -4HLU 4.1 ECFA2_THEMA
95 PsiBlast_CBE 34.6332% -80 - C1 -4ZIR 6.1 ECFA2_THEMA