@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2214c: (2016-05-08 )
MPATQQMSRLVDSPDGVRIAVYHEGNPDGPTVVLVHGFPDSHVLWDGVVPLLAERFRIVRYDNRGVGRSSVPKPISAYTMAHFADDFDAVIGELSPGEPVHVLAHDWGSVGVWEYLRRPGASDRVASFTSVSGPSQDHLVNYVYGGLRRPWRPRTFLRAISQTLRLSYMALFSVPVVAPLLLRVALSSAAVRRNMVGDIPVDQIHHSETLARDAAHSVKTYPANYFRSFSSSRRGRAIPIVDVPVQLIVNSQDPYVRPYGYDQTARWVPRLWRRDIKAGHFSPMSHPQVMAAAVHDFADLADGKQPSRALLRAQVGRPRGYFGDTLVSVTGAGSGIGRETALAFAREGAEIVISDIDEATVKDTAAEIAARGGIAYPYVLDVSDAEAVEAFAERVSAEHGVPDIVVNNAGIGQAGRFLDTPAEQFDRVLAVNLGGVVNGCRAFGQRLVERGTGGHIVNVSSMAAYAPLQSLSAYCTSKAATYMFSDCLRAELDAAGVGLTTICPGVIDTNIVATTGFHAPGTDEEKIDGRRGQIDKMFALRSYGPDKVADAIVSAVKKKKPIRPVAPEAYALYGISRVLPQALRSTARLRVI

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_4(3WYE)
BUDC_CORGT
[Raw transfer]



NAI_B_6(4NBU)
?
[Raw transfer]



NAD_C_7(2PD6)
DHB8_HUMAN
[Raw transfer]



NAD_A_5(2CFC)
HCDR_XANP2
[Raw transfer]



NAI_D_9(4NBU)
?
[Raw transfer]



NAD_B_7(2CFC)
HCDR_XANP2
[Raw transfer]



NAD_D_8(2PD6)
DHB8_HUMAN
[Raw transfer]



NAP_B_4(3UF0)
?
[Raw transfer]



NAI_C_8(4NBU)
?
[Raw transfer]



NAD_C_9(2CFC)
HCDR_XANP2
[Raw transfer]



NAD_A_3(3WYE)
BUDC_CORGT
[Raw transfer]



NAI_A_5(4NBU)
?
[Raw transfer]



NAD_B_6(2PD6)
DHB8_HUMAN
[Raw transfer]



NAD_A_5(2PD6)
DHB8_HUMAN
[Raw transfer]



NAD_B_12(4URF)
?
[Raw transfer]



NAD_B_7(2ZTV)
?
[Raw transfer]



NAD_D_11(2CFC)
HCDR_XANP2
[Raw transfer]



NAD_A_3(4URF)
?
[Raw transfer]



NAD_A_5(2ZTU)
?
[Raw transfer]



NAD_D_9(2ZTU)
?
[Raw transfer]



NAP_A_3(3O03)
?
[Raw transfer]



NAD_C_8(2ZTU)
?
[Raw transfer]



1PS_B_6(4URE)
?
[Raw transfer]



EDO_A_8(5HA5)
?
[Raw transfer]
109 Fugue 82.8026% -60 - C1 -3LLS - ? -
23 PsiBlast_CBE 73.4033% -50 - C2 -4YAG - ? -
1 PsiBlast_PDB 73.3834% -63 - C2 -3R1I - ? -
10 PsiBlast_PDB 73.3128% -64 - C2 -3IOY - ? -
3 PsiBlast_PDB 73.2533% -50 - C2 -4YAI - ? -
2 PsiBlast_PDB 72.9733% -51 - C2 -4YAG - ? -
22 PsiBlast_CBE 72.7133% -51 - C2 -4YAI - ? -
34 PsiBlast_CBE 71.0034% -73 - C2 -4NBU 10.9 ?
43 PsiBlast_CBE 70.6135% -69 - C2 -2CFC 7.3 HCDR_XANP2
36 PsiBlast_CBE 69.9734% -69 - C2 -4NBU 11.2 ?
40 PsiBlast_CBE 69.4835% -66 - C2 -2CFC 7.8 HCDR_XANP2
42 PsiBlast_CBE 69.4735% -67 - C2 -2CFC 7.5 HCDR_XANP2
35 PsiBlast_CBE 69.3334% -71 - C2 -4NBU 11.2 ?
41 PsiBlast_CBE 68.6935% -66 - C2 -2CFC 7.9 HCDR_XANP2
8 PsiBlast_PDB 68.3132% -65 - C2 -4URF 10.7 ?
9 PsiBlast_PDB 68.3033% -63 - C2 -3TJR - ? -
18 PsiBlast_PDB 68.1834% -68 - C2 -3ENN - ? -
19 PsiBlast_PDB 68.0434% -72 - C2 -3EMK - ? -
44 PsiBlast_CBE 67.8937% -78 - C2 -3UF0 8.6 ?
13 PsiBlast_PDB 67.8434% -70 - C2 -4NBU 11.0 ?
25 PsiBlast_CBE 67.7832% -63 - C2 -4URF 10.6 ?
26 PsiBlast_CBE 67.6532% -63 - C2 -4URE 3.6 ?
79 PsiBlast_CBE 66.9433% -66 - C2 -2PD6 7.2 DHB8_HUMAN
37 PsiBlast_CBE 66.7736% -62 - C2 -3WYE 8.1 BUDC_CORGT (first)
20 PsiBlast_PDB 66.1936% -63 - C2 -3WYE 8.5 BUDC_CORGT (first)
77 PsiBlast_CBE 65.8733% -64 - C2 -2PD6 10.5 DHB8_HUMAN
39 PsiBlast_CBE 65.0233% -68 - C2 -5HA5 3.1 ?
80 PsiBlast_CBE 64.9933% -64 - C2 -2PD6 10.8 DHB8_HUMAN
48 PsiBlast_CBE 64.4434% -72 - C2 -2ZTV 9.0 ?
78 PsiBlast_CBE 64.3733% -64 - C2 -2PD6 10.4 DHB8_HUMAN
16 PsiBlast_PDB 63.9233% -67 - C2 -3O03 8.8 ?
66 PsiBlast_CBE 62.1834% -65 - C2 -2ZTU 6.5 ?
65 PsiBlast_CBE 61.9434% -67 - C2 -2ZTU 6.9 ?
68 PsiBlast_CBE 61.9334% -64 - C2 -2ZTU 7.1 ?