@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2234: (2016-05-08 )
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHLAADLLVALDRNHARLLRQLGVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

4NP_D_4(1D1Q)
PPAL_YEAST
[Raw transfer]




4NP_D_4(1D1Q)
PPAL_YEAST
[Raw transfer]




GOL_A_3(1U2Q)
PTPA_MYCTU
[Raw transfer]




MPO_A_5(4LRQ)
?
[Raw transfer]




EPE_B_2(1DG9)
PPAC_BOVIN
[Raw transfer]




PMS_A_5(4Z9A)
PPAC_HUMAN
[Raw transfer]




MES_B_2(5PNT)
PPAC_HUMAN
[Raw transfer]




EPE_B_2(1DG9)
PPAC_BOVIN
[Raw transfer]




B85_A_2(4Z9B)
PPAC_HUMAN
[Raw transfer]




EPE_D_4(1D1P)
PPAL_YEAST
[Raw transfer]




EPE_C_3(1D1P)
PPAL_YEAST
[Raw transfer]




GOL_E_5(1D1Q)
PPAL_YEAST
[Raw transfer]




ADE_B_6(1D2A)
PPAL_YEAST
[Raw transfer]




2 PsiBlast_PDB 97.30100%-132 - C7 -1U2Q 2.4 PTPA_MYCTU
1 PsiBlast_PDB 96.53100%-132 - C7 -1U2P - PTPA_MYCTU -
58 HHSearch 94.2499%-126 - C7 -1U2P - PTPA_MYCTU -
3 PsiBlast_PDB 94.19100%-118 - C7 -2LUO - PTPA_MYCTU -
61 HHSearch 75.4630%-114 - C7 -1D1Q 3.8 PPAL_YEAST
63 HHSearch 73.5034%-124 - C7 -4ETM - YFKJ_BACSU -
64 HHSearch 72.5631%-110 - C7 -3ROF - PTPA_STAAU -
60 HHSearch 72.5534%-116 - C7 -3N8I - PPAC_HUMAN -
22 PsiBlast_CBE 71.2443%-107 - C7 -2CWD - ? -
67 HHSearch 70.9241%-114 - C7 -2CWD - ? -
32 PsiBlast_CBE 70.2533%-118 - C7 -3ROF - PTPA_STAAU -
23 PsiBlast_CBE 70.1043%-107 - C7 -2CWD - ? -
21 PsiBlast_CBE 69.9843%-105 - C7 -2CWD - ? -
29 PsiBlast_CBE 69.8733%-117 - C7 -1D2A 3.5 PPAL_YEAST
4 PsiBlast_PDB 69.3043%-108 - C7 -2CWD - ? -
30 PsiBlast_CBE 69.2133%-115 - C7 -1D1Q 2.7 PPAL_YEAST
79 Fugue 68.6035%-109 - C7 -1DG9 4.7 PPAC_BOVIN
7 PsiBlast_PDB 68.3033%-120 - C7 -1D1P 3.7 PPAL_YEAST
34 PsiBlast_CBE 68.2035%-116 - C7 -4ETM - YFKJ_BACSU -
20 PsiBlast_PDB 67.8733%-113 - C7 -1D2A - PPAL_YEAST -
31 PsiBlast_CBE 67.8033%-115 - C7 -1D1Q 3.7 PPAL_YEAST
27 PsiBlast_CBE 67.2833%-117 - C7 -1D1P 2.9 PPAL_YEAST
8 PsiBlast_PDB 67.2637%-101 - C7 -5PNT 2.6 PPAC_HUMAN
11 PsiBlast_PDB 64.1637%-100 - C7 -4Z9A 2.9 PPAC_HUMAN
12 PsiBlast_PDB 63.3337% -99 - C7 -4Z9B 3.5 PPAC_HUMAN
13 PsiBlast_PDB 61.4238% -98 - C7 -1DG9 4.7 PPAC_BOVIN