@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2268c: (2016-05-09 )
MTATQSPPEPAPDRVRLAGCPLAGTPDVGLTAQDATTALGVPTRRRASSGGIPVATSMWRDAQTVRTYGPAVAKALALRVAGKARSRLTGRHCRKFMQLTDFDPFDPAIAADPYPHYRELLAGERVQYNPKRDVYILSRYADVREAARNHDTLSSARGVTFSRGWLPFLPTSDPPAHTRMRKQLAPGMARGALETWRPMVDQLARELVGGLLTQTPADVVSTVAAPMPMRAITSVLGVDGPDEAAFCRLSNQAVRITDVALSASGLISLVQGFAGFRRLRALFTHRRDNGLLRECTVLGKLATHAEQGRLSDDELFFFAVLLLVAGYESTAHMISTLFLTLADYPDQLTLLAQQPDLIPSAIEEHLRFISPIQNICRTTRVDYSVGQAVIPAGSLVLLAWGAANRDPRQYEDPDVFRADRNPVGHLAFGSGIHLCPGTQLARMEGQAILREIVANIDRIEVVEPPTWTTNANLRGLTRLRVAVTPRVAP

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEM_A_2(3A4H)
CPVDH_PSEAH
[Raw transfer]




HEM_A_2(3A4G)
CPVDH_PSEAH
[Raw transfer]




HEM_A_2(3VRM)
CPVDH_PSEAH
[Raw transfer]




HEM_A_2(1Z8P)
CPXJ_SACEN
[Raw transfer]




HEM_A_2(1Z8O)
CPXJ_SACEN
[Raw transfer]




HEM_A_2(1JIN)
CPXJ_SACEN
[Raw transfer]




HEM_A_2(1JIO)
CPXJ_SACEN
[Raw transfer]




HEM_A_2(1JIP)
CPXJ_SACEN
[Raw transfer]




HEM_A_2(1EUP)
CPXJ_SACEN
[Raw transfer]




FMT_A_4(3ZPI)
PIKC_STRVZ
[Raw transfer]




GOL_A_8(3MGX)
?
[Raw transfer]




OXY_A_3(1Z8Q)
CPXJ_SACEN
[Raw transfer]




2 PsiBlast_PDB 97.9834%-114 - C5 -3A4G 9.8 CPVDH_PSEAH
3 PsiBlast_PDB 97.7234%-109 - C5 -3A4H 10.7 CPVDH_PSEAH
1 PsiBlast_PDB 97.7034%-109 - C5 -3VRM 11.1 CPVDH_PSEAH
47 PsiBlast_CBE 96.1931%-102 - C5 -4DO1 - ? -
43 PsiBlast_CBE 95.5631%-101 - C5 -4EGM - ? -
45 PsiBlast_CBE 95.4731% -99 - C5 -4EGM - ? -
96 PsiBlast_CBE 95.3131% -97 - C5 -2VZ7 - PIKC_STRVZ -
40 PsiBlast_CBE 95.3131%-102 - C5 -4EGN - ? -
49 PsiBlast_CBE 95.2431%-101 - C5 -4DNZ - ? -
138 HHSearch 95.2231% -94 - C5 -4MM0 - ? -
42 PsiBlast_CBE 95.2031% -99 - C5 -4EGN - ? -
20 PsiBlast_PDB 95.1031% -99 - C5 -4EGN - ? -
48 PsiBlast_CBE 94.9331% -98 - C5 -4DO1 - ? -
38 PsiBlast_CBE 94.8631%-100 - C5 -4EGO - ? -
17 PsiBlast_PDB 94.8331%-100 - C5 -4DNZ - ? -
28 PsiBlast_CBE 94.7633%-103 - C5 -3A50 - CPVDH_PSEAH -
70 PsiBlast_CBE 94.7431% -96 - C5 -4UMZ - PIKC_STRVZ -
19 PsiBlast_PDB 94.7331%-100 - C5 -4EGM - ? -
94 PsiBlast_CBE 94.7231% -97 - C5 -2VZM - PIKC_STRVZ -
23 PsiBlast_CBE 94.7133%-103 - C5 -3A51 - CPVDH_PSEAH -
90 PsiBlast_CBE 92.6231% -95 - C5 -3ZPI 2.9 PIKC_STRVZ
7 PsiBlast_PDB 80.3435%-106 - C5 -1JIP 11.9 CPXJ_SACEN
11 PsiBlast_PDB 80.0735%-104 - C5 -1JIN 11.8 CPXJ_SACEN
14 PsiBlast_PDB 79.7134%-106 - C5 -1JIO 9.1 CPXJ_SACEN
8 PsiBlast_PDB 79.6835%-105 - C5 -1Z8P 8.4 CPXJ_SACEN
13 PsiBlast_PDB 79.4634%-104 - C5 -1Z8Q 3.0 CPXJ_SACEN
15 PsiBlast_PDB 79.3634%-103 - C5 -1Z8O 11.0 CPXJ_SACEN
10 PsiBlast_PDB 78.9635%-104 - C5 -1EUP 8.6 CPXJ_SACEN