@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2364c: (2016-05-10 )
MTEFHSGFVCLVGRPNTGKSTLTNALVGAKVAITSTRPQTTRHAIRGIVHSDDFQIILVDTPGLHRPRTLLGKRLNDLVRETYAAVDVIGLCIPADEAIGPGDRWIVEQLRSTGPANTTLVVIVTKIDKVPKEKVVAQLVAVSELVTNAAEIVPVSAMTGDRVDLLIDVLAAALPAGPAYYPDGELTDEPEEVLMAELIREAALQGVRDELPHSLAVVIDEVSPREGRDDLIDVHAALYVERDSQKGIVIGKGGARLREVGTAARSQIENLLGTKVYLDLRVKVAKNWQRDPKQLGRLGF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]




GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GNP_A_3(1WF3)
ERA_THET8
[Raw transfer]




GDP_A_3(3IEU)
ERA_ECOLI
[Raw transfer]




GDP_B_10(3IEU)
ERA_ECOLI
[Raw transfer]




4 PsiBlast_PDB 94.8936%-125 - C1 -3IEV 10.3 ERA_AQUAE
80 HHSearch 94.1136%-120 - C1 -3IEV 10.3 ERA_AQUAE
2 PsiBlast_PDB 94.0036%-126 - C1 -3R9W 10.1 ERA_AQUAE
3 PsiBlast_PDB 93.2336%-126 - C1 -3R9X 10.0 ERA_AQUAE
1 PsiBlast_PDB 89.7240%-117 - C1 -1WF3 10.0 ERA_THET8
79 HHSearch 88.1440%-113 * C1 *1WF3 10.0 ERA_THET8
81 HHSearch 86.8734%-131 - C1 -1EGA - ERA_ECOLI -
21 PsiBlast_CBE 86.3333%-129 - C1 -3IEU 7.4 ERA_ECOLI
5 PsiBlast_PDB 85.7033%-128 - C1 -1EGA - ERA_ECOLI -
22 PsiBlast_CBE 85.6133%-126 - C1 -1EGA - ERA_ECOLI -
7 PsiBlast_PDB 85.0033%-128 - C1 -3IEU 7.2 ERA_ECOLI
70 Fugue 66.1132%-131 - C1 -1EGA - ERA_ECOLI -
71 Fugue 64.3722%-106 - C1 -1XZP - MNME_THEMA -
85 HHSearch 63.5928%-134 - C1 -1MKY - DER_THEMA -
72 Fugue 61.7621%-135 - C1 -1PUI - ENGB_ECOLI -
12 PsiBlast_PDB 61.3727%-141 - C1 -4DCT - DER_BACSU -
91 HHSearch 61.0825%-128 - C1 -5DN8 - DER_COXBU -
100 HHSearch 61.0124%-151 - C1 -4DCU - DER_BACSU -
17 PsiBlast_PDB 60.7929%-121 - C1 -1MKY - DER_THEMA -
14 PsiBlast_PDB 60.7227%-133 - C1 -4DCV - DER_BACSU -