@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2467: (2016-05-11 )
MALPNLTRDQAVERAALITVDSYQIILDVTDGNGAPGERTFRSTTTVVFDALPGADTVIDISAHTVRRASLNDQDLDVSGYDEAAGIPLRGLAQRNVVVVDADCHYSNTGEGLHRFVDPVDGETYLYSQFETADAKRMFACFDQPDLKATFDVRVTAPAHWKVISNGAPLAAANGVHTFATTPRMSTYLVALIAGPYAAWTDTYIDDHGEIPLGIYCRASLAEYMDAERLFTQTKQGFGFYHKHFGLPYAFGKYDQLFVPEFNAGAMENAGAVTFLEDYVFRSKVTRASYERRAETVLHEMAHMWFGDLVTMTWWDDLWLNESFATFASVLCQSEATEFTEAWTTFATVEKSWAYRQDQLPSTHPIAADIPDLAAVEVNFDGITYAKGASVLKQLVAYVGLERFLAGLRDYFRTHAFGNASFDDLLAALEKASGRDLSNWGEQWLKTTGLNTLRPDFEVDAEGRFTRFAVTQSGAAPGAGETRVHRLAVGIYDDDGSKSSGKLVRVHREELDVSGPITNVPALVGVSRGKLILVNDDDLTYCSLRLDERSLQTALDRIADIAEPLPRTLVWSAAWEMTREAELRARDFVSLVSGGVHAETEVGVAQRLLLQAQTALGCYAEPGWARERGWPQFADRLLELAREAEPGSDHQLAYINSLCSSVLSPRHVQTLGALLEGEPAACGLAGLAVDTDLRWRIVTALATAGAIDADGPETPRIDAEVQRDPTAAGKRHAAQARAARPQFVVKDEAFTTVVEDDTLANATGRAMIAGIAAPGQGELLKPFARRYFQAIPGVWARRSSEVAQSVVIGLYPHWDISEQGITAAEEFLSDPEVPPALRRLVLEGQAAVQRSLRARNFDADG

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BES_A_10(4KXB)
AMPE_HUMAN
[Raw transfer]



BES_A_9(2YD0)
ERAP1_HUMAN
[Raw transfer]



GLU_A_11(4KXC)
AMPE_HUMAN
[Raw transfer]



BES_A_13(4FKK)
AMPN_PIG
[Raw transfer]



GLU_A_12(4KXD)
AMPE_HUMAN
[Raw transfer]



GOL_A_6(4X2U)
AMP1_PLAFQ
[Raw transfer]



ASP_A_12(4KXA)
AMPE_HUMAN
[Raw transfer]



PHE_A_5(3B34)
AMPN_ECOLI
[Raw transfer]



ARG_A_11(4KX9)
AMPE_HUMAN
[Raw transfer]



ALA_A_13(4FKH)
AMPN_PIG
[Raw transfer]



CHAIN_B_2(4HOM)
AMPN_PIG
[Raw transfer]
-
BES_A_12(4FYR)
AMPN_HUMAN
[Raw transfer]



CHAIN_B_2(4NAQ)
AMPN_PIG
[Raw transfer]
-
CHAIN_B_2(4NZ8)
AMPN_PIG
[Raw transfer]
-
ACY_A_22(4FYQ)
AMPN_HUMAN
[Raw transfer]



CHAIN_C_2(4KX8)
AMPE_HUMAN
[Raw transfer]
-
CHAIN_B_2(4OU3)
AMPN_PIG
[Raw transfer]
-
CHAIN_B_2(4FYT)
AMPN_HUMAN
[Raw transfer]
-
CHAIN_C_2(4FYS)
AMPN_HUMAN
[Raw transfer]
-
65 Fugue 96.3623% -72 - C5 -1Z1W - TRF3_THEAC -
48 HHSearch 93.5923% -76 - C5 -1Z5H - TRF3_THEAC -
42 HHSearch 93.5418% -68 * C5 *5AB0 - ERAP2_HUMAN -
47 HHSearch 91.6320% -72 - C5 -4FKE - AMPN_PIG -
67 Fugue 91.4422% -64 - C5 -4WZ9 - ? -
45 HHSearch 88.9920% -72 - C5 -4WZ9 - ? -
44 HHSearch 88.8719% -65 - C5 -4KX7 - AMPE_HUMAN -
49 HHSearch 86.9717% -58 - C5 -4X2U 2.9 AMP1_PLAFQ
68 Fugue 86.8218% -52 - C5 -3B34 - AMPN_ECOLI -
50 HHSearch 84.5718% -64 - C5 -3B34 3.2 AMPN_ECOLI
22 PsiBlast_CBE 84.5235% -87 - C5 -1Z5H - TRF3_THEAC -
51 HHSearch 84.3618% -62 - C5 -5DLL - ? -
2 PsiBlast_PDB 84.1835% -86 - C5 -1Z1W - TRF3_THEAC -
21 PsiBlast_CBE 83.7835% -87 - C5 -3Q7J - TRF3_THEAC -
3 PsiBlast_PDB 83.6735% -86 - C5 -1Z5H - TRF3_THEAC -
1 PsiBlast_PDB 83.2335% -84 - C5 -3Q7J - TRF3_THEAC -
52 HHSearch 76.9619% -72 - C5 -4QHP - ? -
30 PsiBlast_CBE 75.2131% -85 - C5 -3QNF - ERAP1_HUMAN -
29 PsiBlast_CBE 74.9831% -85 - C5 -3QNF - ERAP1_HUMAN -
32 PsiBlast_CBE 74.9231% -86 - C5 -2YD0 4.9 ERAP1_HUMAN
24 PsiBlast_CBE 71.7833% -76 - C5 -4FYT 4.2 AMPN_HUMAN
20 PsiBlast_PDB 71.6433% -75 - C5 -4FYS 7.0 AMPN_HUMAN
18 PsiBlast_PDB 71.3233% -78 - C5 -4FYQ 3.8 AMPN_HUMAN
19 PsiBlast_PDB 71.2333% -76 - C5 -4FYR 4.4 AMPN_HUMAN
13 PsiBlast_PDB 70.4333% -73 - C5 -4OU3 3.5 AMPN_PIG
17 PsiBlast_PDB 70.3833% -76 - C5 -4NZ8 3.9 AMPN_PIG
25 PsiBlast_CBE 70.3533% -75 - C5 -4NAQ 4.2 AMPN_PIG
16 PsiBlast_PDB 70.3033% -74 - C5 -4FKK 4.4 AMPN_PIG
15 PsiBlast_PDB 70.3033% -75 - C5 -4FKH 3.8 AMPN_PIG
9 PsiBlast_PDB 70.1833% -65 - C5 -4KXC 3.8 AMPE_HUMAN
12 PsiBlast_PDB 70.1333% -75 - C5 -4HOM 4.6 AMPN_PIG
10 PsiBlast_PDB 70.0133% -67 - C5 -4KXD 3.6 AMPE_HUMAN
8 PsiBlast_PDB 69.8033% -68 - C5 -4KXB 5.1 AMPE_HUMAN
6 PsiBlast_PDB 69.7533% -66 - C5 -4KX9 3.0 AMPE_HUMAN
7 PsiBlast_PDB 69.6933% -67 - C5 -4KXA 3.6 AMPE_HUMAN
5 PsiBlast_PDB 69.3033% -65 - C5 -4KX8 4.4 AMPE_HUMAN