@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2555c: (2016-05-11 )
MQTHEIRKRFLDHFVKAGHTEVPSASVILDDPNLLFVNAGMVQFVPFFLGQRTPPYPTATSIQKCIRTPDIDEVGITTRHNTFFQMAGNFSFGDYFKRGAIELAWALLTNSLAAGGYGLDPERIWTTVYFDDDEAVRLWQEVAGLPAERIQRRGMADNYWSMGIPGPCGPSSEIYYDRGPEFGPAGGPIVSEDRYLEVWNLVFMQNERGEGTTKEDYQILGPLPRKNIDTGMGVERIALVLQDVHNVYETDLLRPVIDTVARVAARAYDVGNHEDDVRYRIIADHSRTAAILIGDGVSPGNDGRGYVLRRLLRRVIRSAKLLGIDAAIVGDLMATVRNAMGPSYPELVADFERISRIAVAEETAFNRTLASGSRLFEEVASSTKKSGATVLSGSDAFTLHDTYGFPIELTLEMAAETGLQVDEIGFRELMAEQRRRAKADAAARKHAHADLSAYRELVDAGATEFTGFDELRSQARILGIFVDGKRVPVVAHGVAGGAGEGQRVELVLDRTPLYAESGGQIADEGTISGTGSSEAARAAVTDVQKIAKTLWVHRVNVESGEFVEGDTVIAAVDPGWRRGATQGHSGTHMVHAALRQVLGPNAVQAGSLNRPGYLRFDFNWQGPLTDDQRTQVEEVTNEAVQADFEVRTFTEQLDKAKAMGAIALFGESYPDEVRVVEMGGPFSLELCGGTHVSNTAQIGPVTILGESSIGSGVRRVEAYVGLDSFRHLAKERALMAGLASSLKVPSEEVPARVANLVERLRAAEKELERVRMASARAAATNAAAGAQRIGNVRLVAQRMSGGMTAADLRSLIGDIRGKLGSEPAVVALIAEGESQTVPYAVAANPAAQDLGIRANDLVKQLAVAVEGRGGGKADLAQGSGKNPTGIDAALDAVRSEIAVIARVG

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A5A_A_2(3HXU)
SYA_ECOLI
[Raw transfer]



5AL_A_2(3HXY)
SYA_ECOLI
[Raw transfer]



A5A_A_3(4XEO)
SYAC_HUMAN
[Raw transfer]



SSA_A_3(3HY1)
SYA_ECOLI
[Raw transfer]



A5A_A_2(4XEM)
?
[Raw transfer]



A5A_B_9(4XEO)
SYAC_HUMAN
[Raw transfer]



SSA_A_2(3HXW)
SYA_ECOLI
[Raw transfer]



A5A_A_2(4XEM)
?
[Raw transfer]



G5A_B_7(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_4(3HXV)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



ACP_A_2(3HXX)
SYA_ECOLI
[Raw transfer]



ATP_B_10(1YFR)
SYA_AQUAE
[Raw transfer]



ATP_A_9(1YFR)
SYA_AQUAE
[Raw transfer]



GLY_B_2(1YFT)
SYA_AQUAE
[Raw transfer]



ALA_D_4(1YFS)
SYA_AQUAE
[Raw transfer]



ALA_C_3(1YFS)
SYA_AQUAE
[Raw transfer]



SER_B_2(1YGB)
SYA_AQUAE
[Raw transfer]
29 HHSearch 92.7726% -70 * C1 *3WQY - SYA_ARCFU -
17 PsiBlast_PDB 89.7024% -68 - C1 -3WQY - SYA_ARCFU -
18 PsiBlast_PDB 88.7624% -71 - C1 -3WQZ - SYA_ARCFU -
27 PsiBlast_CBE 86.8945% -81 - C1 -3HXZ - SYA_ECOLI -
9 PsiBlast_PDB 86.8945% -83 - C1 -3HXX 10.1 SYA_ECOLI
24 PsiBlast_CBE 86.8645% -82 - C1 -3HY0 5.8 SYA_ECOLI
11 PsiBlast_PDB 86.8145% -81 - C1 -3HXZ - SYA_ECOLI -
26 PsiBlast_CBE 86.7545% -81 - C1 -3HXZ - SYA_ECOLI -
25 PsiBlast_CBE 86.6545% -81 - C1 -3HXZ - SYA_ECOLI -
8 PsiBlast_PDB 86.6145% -83 - C1 -3HXW 8.7 SYA_ECOLI
12 PsiBlast_PDB 86.5845% -82 - C1 -3HY0 5.8 SYA_ECOLI
33 HHSearch 86.4746% -83 - C1 -3HY0 5.8 SYA_ECOLI
6 PsiBlast_PDB 86.4645% -83 - C1 -3HXU 8.8 SYA_ECOLI
10 PsiBlast_PDB 86.1345% -84 - C1 -3HXY 8.7 SYA_ECOLI
13 PsiBlast_PDB 86.0845% -79 - C1 -3HY1 7.7 SYA_ECOLI
7 PsiBlast_PDB 86.0845% -82 - C1 -3HXV 5.8 SYA_ECOLI
1 PsiBlast_PDB 85.1945% -81 - C1 -1YFR 4.4 SYA_AQUAE
21 PsiBlast_CBE 85.0545% -85 - C1 -1YFS 2.5 SYA_AQUAE
31 HHSearch 84.7728% -70 - C1 -2ZTG - SYA_ARCFU -
3 PsiBlast_PDB 84.7745% -83 - C1 -1YFT 3.1 SYA_AQUAE
2 PsiBlast_PDB 84.5345% -84 - C1 -1YFS 2.6 SYA_AQUAE
4 PsiBlast_PDB 82.5845% -87 - C1 -1YGB 3.5 SYA_AQUAE
22 PsiBlast_CBE 82.2745% -80 - C1 -1YFR 5.8 SYA_AQUAE
16 PsiBlast_PDB 74.8442% -88 - C1 -4XEO 8.8 SYAC_HUMAN
34 HHSearch 74.5042% -84 - C1 -4XEM 8.7 ?
15 PsiBlast_PDB 74.4042% -88 - C1 -4XEM 8.7 ?
28 PsiBlast_CBE 74.2242% -90 - C1 -4XEO 8.7 SYAC_HUMAN