@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2614c: (2016-05-12 )
MSAPAQPAPGVDGGDPSQARIRVPAGTTAATAVGEAGLPRRGTPDAIVVVRDADGNLRDLSWVPDVDTDITPVAANTDDGRSVIRHSTAHVLAQAVQELFPQAKLGIGPPITDGFYYDFDVPEPFTPEDLAALEKRMRQIVKEGQLFDRRVYESTEQARAELANEPYKLELVDDKSGDAEIMEVGGDELTAYDNLNPRTRERVWGDLCRGPHIPTTKHIPAFKLTRSSAAYWRGDQKNASLQRIYGTAWESQEALDRHLEFIEEAQRRDHRKLGVELDLFSFPDEIGSGLAVFHPKGGIVRRELEDYSRRKHTEAGYQFVNSPHITKAQLFHTSGHLDWYADGMFPPMHIDAEYNADGSLRKPGQDYYLKPMNCPMHCLIFRARGRSYRELPLRLFEFGTVYRYEKSGVVHGLTRVRGLTMDDAHIFCTRDQMRDELRSLLRFVLDLLADYGLTDFYLELSTKDPEKFVGAEEVWEEATTVLAEVGAESGLELVPDPGGAAFYGPKISVQVKDALGRTWQMSTIQLDFNFPERFGLEYTAADGTRHRPVMIHRALFGSIERFFGILTEHYAGAFPAWLAPVQVVGIPVADEHVAYLEEVATQLKSHGVRAEVDASDDRMAKKIVHHTNHKVPFMVLAGDRDVAAGAVSFRFGDRTQINGVARDDAVAAIVAWIADRENAVPTAELVKVAGRE

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TSB_A_6(4YYE)
SYTM_YEAST
[Raw transfer]




TSB_B_11(4YYE)
SYTM_YEAST
[Raw transfer]




SSA_B_6(1FYF)
SYT_ECOLI
[Raw transfer]




SSA_A_5(1FYF)
SYT_ECOLI
[Raw transfer]




409_A_4(4HWO)
SYT_ECOLI
[Raw transfer]




TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




TSB_A_3(3UH0)
SYTM_YEAST
[Raw transfer]




409_B_6(4HWO)
SYT_ECOLI
[Raw transfer]




1B2_B_6(4HWR)
SYT_ECOLI
[Raw transfer]




1B3_A_4(4HWS)
SYT_ECOLI
[Raw transfer]




1B3_B_6(4HWS)
SYT_ECOLI
[Raw transfer]




X16_B_6(4HWP)
SYT_ECOLI
[Raw transfer]




X16_A_4(4HWP)
SYT_ECOLI
[Raw transfer]




1B2_A_4(4HWR)
SYT_ECOLI
[Raw transfer]




1B2_B_6(4HWT)
SYTC_HUMAN
[Raw transfer]




1B2_A_4(4HWT)
SYTC_HUMAN
[Raw transfer]




1B2_A_4(4HWT)
SYTC_HUMAN
[Raw transfer]




THR_B_5(1EVK)
SYT_ECOLI
[Raw transfer]




2CR_B_9(4P3O)
SYT_ECOLI
[Raw transfer]




2CR_A_4(4P3O)
SYT_ECOLI
[Raw transfer]




2CR_A_4(4P3P)
SYT_ECOLI
[Raw transfer]




2CR_B_8(4P3P)
SYT_ECOLI
[Raw transfer]




61 HHSearch 96.7840% -83 - C1 -1NYR - SYT_STAAW -
1 PsiBlast_PDB 94.8640% -92 - C1 -1NYQ - SYT_STAAW -
2 PsiBlast_PDB 94.4540% -89 - C1 -1NYR - SYT_STAAW -
60 HHSearch 92.9339% -82 - C2 -1QF6 - SYT_ECOLI -
22 PsiBlast_CBE 91.8940% -85 - C1 -1NYQ - SYT_STAAW -
3 PsiBlast_PDB 91.7040% -84 - C1 -1QF6 - SYT_ECOLI -
21 PsiBlast_CBE 91.5340% -89 - C1 -1NYR - SYT_STAAW -
64 HHSearch 78.0842% -94 * C1 *1EVL - SYT_ECOLI -
34 PsiBlast_CBE 77.0243% -95 - C1 -1EVK 2.9 SYT_ECOLI
5 PsiBlast_PDB 76.8243% -93 - C1 -1EVL - SYT_ECOLI -
38 PsiBlast_CBE 76.6543% -94 - C1 -4HWO 5.9 SYT_ECOLI
10 PsiBlast_PDB 76.5643% -96 - C1 -4HWR 3.8 SYT_ECOLI
36 PsiBlast_CBE 76.5143% -95 - C1 -4HWR 5.6 SYT_ECOLI
37 PsiBlast_CBE 76.4543% -93 - C1 -4HWP 6.5 SYT_ECOLI
33 PsiBlast_CBE 76.4543% -93 - C1 -1EVL - SYT_ECOLI -
6 PsiBlast_PDB 76.4243% -95 - C1 -1FYF 6.6 SYT_ECOLI
35 PsiBlast_CBE 76.4143% -94 - C1 -4HWS 7.1 SYT_ECOLI
30 PsiBlast_CBE 76.3143% -93 - C1 -1FYF 6.6 SYT_ECOLI
31 PsiBlast_CBE 76.2443% -92 - C1 -1EVL - SYT_ECOLI -
43 PsiBlast_CBE 76.1840% -98 - C1 -4P3N - SYTC_HUMAN -
65 HHSearch 76.0840% -98 - C1 -4HWT 5.1 SYTC_HUMAN
39 PsiBlast_CBE 75.9443% -95 - C1 -4P3P 8.8 SYT_ECOLI
13 PsiBlast_PDB 75.9343% -94 - C1 -4P3P 9.2 SYT_ECOLI
8 PsiBlast_PDB 75.8843% -93 - C1 -4HWO 5.4 SYT_ECOLI
41 PsiBlast_CBE 75.8240% -96 - C1 -4HWT 5.3 SYTC_HUMAN
12 PsiBlast_PDB 75.8243% -94 - C1 -4P3O 9.0 SYT_ECOLI
9 PsiBlast_PDB 75.7143% -92 - C1 -4HWP 5.9 SYT_ECOLI
11 PsiBlast_PDB 75.6943% -93 - C1 -4HWS 6.5 SYT_ECOLI
14 PsiBlast_PDB 75.3140% -97 - C1 -4HWT 5.1 SYTC_HUMAN
40 PsiBlast_CBE 75.2143% -92 - C1 -4P3O 8.8 SYT_ECOLI
63 HHSearch 72.4934% -91 - C1 -3UH0 6.5 SYTM_YEAST
19 PsiBlast_PDB 66.2439% -84 - C1 -3UH0 6.5 SYTM_YEAST
20 PsiBlast_PDB 66.2039% -85 - C1 -4YYE 6.7 SYTM_YEAST
48 PsiBlast_CBE 66.1339% -85 - C1 -4YYE 6.7 SYTM_YEAST