@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2678c: (2016-05-12 )
MSTRRDLPQSPYLAAVTGRKPSRVPVWFMRQAGRSLPEYRALRERYSMLAACFEPDVACEITLQPIRRYDVDAAILFSDIVVPLRAAGVDLDIVADVGPVIADPVRTAADVAAMKPLDPQAIQPVLVAASLLVAELGDVPLIGFAGAPFTLASYLVEGGPSRHHAHVKAMMLAEPASWHALMAKLTDLTIAFLVGQIDAGVDAIQVFDSWAGALSPIDYRQYVLPHSARVFAALGEHGVPMTHFGVGTAELLGAMSEAVTAGERPGRGAVVGVDWRTPLTDAAARVVPGTALQGNLDPAVVLAGWPAVERAARAVVDDGRRAVDAGAAGHIFNLGHGVLPESDPAVLADLVSLVHSL

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1CP_A_2(1R3Q)
DCUP_HUMAN
[Raw transfer]




CP3_A_2(1R3W)
DCUP_HUMAN
[Raw transfer]




1CP_A_2(1R3S)
DCUP_HUMAN
[Raw transfer]




1CP_A_2(1R3S)
DCUP_HUMAN
[Raw transfer]




CP3_A_2(2Q71)
DCUP_HUMAN
[Raw transfer]




CP3_A_2(1R3Y)
DCUP_HUMAN
[Raw transfer]




CP3_A_2(1R3T)
DCUP_HUMAN
[Raw transfer]




1CP_A_2(1R3V)
DCUP_HUMAN
[Raw transfer]




EDO_B_10(4ZR8)
?
[Raw transfer]




EDO_A_5(4ZR8)
?
[Raw transfer]




EDO_A_5(4ZR8)
?
[Raw transfer]




2 PsiBlast_PDB 95.2141%-118 - C2 -4ZR8 2.9 ?
37 HHSearch 95.1945%-120 - C2 -2INF - DCUP_BACSU -
21 PsiBlast_CBE 94.7741%-115 - C2 -4ZR8 2.0 ?
3 PsiBlast_PDB 94.7041%-115 - C2 -4WSH - DCUP_PSEAE -
38 HHSearch 94.6541%-121 - C2 -4EXQ - DCUP_BURTA -
25 PsiBlast_CBE 94.5640%-119 - C2 -4EXQ - DCUP_BURTA -
40 HHSearch 94.3640%-116 - C2 -4WSH - DCUP_PSEAE -
42 HHSearch 93.9242%-122 * C2 *4ZR8 2.9 ?
22 PsiBlast_CBE 93.2641%-113 - C2 -4WSH - DCUP_PSEAE -
1 PsiBlast_PDB 93.2443%-118 - C2 -2INF - DCUP_BACSU -
27 Fugue 93.1137%-117 - C2 -1URO - DCUP_HUMAN -
4 PsiBlast_PDB 92.9938%-116 - C2 -3CYV - DCUP_SHIFL -
20 PsiBlast_PDB 92.7137%-118 - C2 -1R3S 9.8 DCUP_HUMAN
41 HHSearch 92.4137%-117 - C2 -1R3S 9.9 DCUP_HUMAN
17 PsiBlast_PDB 92.1437%-117 - C2 -1R3V 7.3 DCUP_HUMAN
15 PsiBlast_PDB 92.1237%-119 - C2 -3GVV - DCUP_HUMAN -
23 PsiBlast_CBE 91.9737%-117 - C2 -1R3T 8.6 DCUP_HUMAN
43 HHSearch 91.8536%-123 - C2 -2EJA - DCUP_AQUAE -
19 PsiBlast_PDB 91.8037%-115 - C2 -1JPI - DCUP_HUMAN -
26 PsiBlast_CBE 91.7435%-125 - C2 -2EJA - DCUP_AQUAE -
9 PsiBlast_PDB 91.4737%-117 - C2 -1R3Q 9.4 DCUP_HUMAN
10 PsiBlast_PDB 91.2837%-117 - C2 -1R3Y 10.5 DCUP_HUMAN
18 PsiBlast_PDB 90.9737%-115 - C2 -1R3W 10.0 DCUP_HUMAN
24 PsiBlast_CBE 90.6337%-117 - C2 -2Q71 11.4 DCUP_HUMAN