@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2710: (2016-05-13 )
MADAPTRATTSRVDSDLDAQSPAADLVRVYLNGIGKTALLNAAGEVELAKRIEAGLYAEHLLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPIDKINDLLEHSRDPVSLDMPVGSEEEAPLGDFIEDAEAMSAENAVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLRHGERADRLRSYAS

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_I_8(5E18)
?
[Raw transfer]
-
NACID_I_9(5E17)
?
[Raw transfer]
-
NACID_H_8(4OIO)
?
[Raw transfer]
-
NACID_H_8(4OIP)
?
[Raw transfer]
-
NACID_H_8(4OIN)
?
[Raw transfer]
-
NACID_H_8(4G7H)
?
[Raw transfer]
-
NACID_H_8(4G7O)
?
[Raw transfer]
-
NACID_H_13(4G7Z)
?
[Raw transfer]
-
NACID_H_8(4Q5S)
?
[Raw transfer]
-
NACID_H_8(4OIQ)
?
[Raw transfer]
-
CHAIN_H_8(4Q4Z)
?
[Raw transfer]
-
NACID_H_8(4OIR)
?
[Raw transfer]
-
NACID_R_16(4G7H)
?
[Raw transfer]
-
NACID_R_15(4G7Z)
?
[Raw transfer]
-
NACID_P_16(4XLS)
SIGA_THEAQ
[Raw transfer]
-
NACID_R_17(4G7O)
?
[Raw transfer]
-
NACID_S_18(4XLS)
SIGA_THEAQ
[Raw transfer]
-
21 PsiBlast_CBE 93.7844% -98 - C10 -4XLS 4.0 SIGA_THEAQ
23 PsiBlast_CBE 93.7644% -99 - C10 -4XLN - SIGA_THEAQ -
3 PsiBlast_PDB 93.5944% -97 - C10 -4XLN - SIGA_THEAQ -
7 PsiBlast_PDB 93.3544%-101 - C10 -4XLS 4.0 SIGA_THEAQ
5 PsiBlast_PDB 93.3344% -94 - C10 -4XLQ - SIGA_THEAQ -
6 PsiBlast_PDB 93.0744%-101 - C10 -4XLR - SIGA_THEAQ -
22 PsiBlast_CBE 93.0544%-100 - C10 -4XLR - SIGA_THEAQ -
4 PsiBlast_PDB 93.0544% -98 - C10 -4XLP - SIGA_THEAQ -
80 HHSearch 91.2150% -84 - C10 -2A6H - ? -
40 PsiBlast_CBE 88.7652% -90 - C10 -4G7H 11.6 ?
36 PsiBlast_CBE 88.1752% -92 - C10 -4G7Z 11.5 ?
30 PsiBlast_CBE 88.0952% -88 - C10 -4OIR 10.2 ?
33 PsiBlast_CBE 88.0152% -90 - C10 -4OIO 11.6 ?
39 PsiBlast_CBE 87.9852% -90 - C10 -4G7H 11.5 ?
38 PsiBlast_CBE 87.8752% -93 - C10 -4G7O 11.0 ?
32 PsiBlast_CBE 87.6552% -89 - C10 -4OIP 11.6 ?
31 PsiBlast_CBE 87.5752% -87 - C10 -4OIQ 10.9 ?
69 Fugue 87.2941% -79 - C10 -4LLG - RPOD_ECOLI -
34 PsiBlast_CBE 87.1452% -92 - C10 -4OIN 10.4 ?
37 PsiBlast_CBE 86.7052% -88 - C10 -4G7O 11.7 ?
24 PsiBlast_CBE 86.6952% -91 - C10 -4Q4Z 9.9 ?
35 PsiBlast_CBE 86.2552% -90 - C10 -4G7Z 11.8 ?
20 PsiBlast_PDB 85.6552% -92 - C10 -4Q5S 12.6 ?
29 PsiBlast_CBE 85.5852% -91 - C10 -5E17 3.8 ?
28 PsiBlast_CBE 85.3052% -93 - C10 -5E18 3.4 ?