@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2752c: (2016-05-13 )
MDVDLPPPGPLTSGGLRVTALGGINEIGRNMTVFEHLGRLLIIDCGVLFPGHDEPGVDLILPDMRHVEDRLDDIEALVLTHGHEDHIGAIPFLLKLRPDIPVVGSKFTLALVAEKCREYRITPVFVEVREGQSTRHGVFECEYFAVNHSTPDALAIAVYTGAGTILHTGDIKFDQLPPDGRPTDLPGMSRLGDTGVDLLLCDSTNAEIPGVGPSESEVGPTLHRLIRGADGRVIVACFASNVDRVQQIIDAAVALGRRVSFVGRSMVRNMRVARQLGFLRVADSDLIDIAAAETMAPDQVVLITTGTQGEPMSALSRMSRGEHRSITLTAGDLIVLSSSLIPGNEEAVFGVIDALSKIGARVVTNAQARVHVSGHAYAGELLFLYNGVRPRNVMPVHGTWRMLRANAKLAASTGVPQESILLAENGVSVDLVAGKASISGAVPVGKMFVDGLIAGDVGDITLGERLILSSGFVAVTVVVRRGTGQPLAAPHLHSRGFSEDPKALEPAVRKVEAELESLVAANVTDPIRIAQGVRRTVGKWVGETYRRQPMIVPTVIEV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



U5P_A_5(3BK2)
RNJ_THET2
[Raw transfer]



C5P_B_9(5A0V)
?
[Raw transfer]



NACID_F_4(5A0T)
?
[Raw transfer]
-
NACID_E_3(5A0V)
?
[Raw transfer]
-
U5P_A_8(4XWT)
?
[Raw transfer]



NACID_E_3(5A0T)
?
[Raw transfer]
-
NACID_E_3(5A0T)
?
[Raw transfer]
-
NACID_D_3(4XWW)
?
[Raw transfer]
-
NACID_D_3(4XWW)
?
[Raw transfer]
-
NACID_E_4(4XWW)
?
[Raw transfer]
-
U5P_B_12(4XWT)
?
[Raw transfer]



CHAIN_B_2(3T3O)
RNJ_THET2
[Raw transfer]
-
NACID_F_4(5A0V)
?
[Raw transfer]
-
CHAIN_B_2(3T3N)
RNJ_THET2
[Raw transfer]
-
2 PsiBlast_PDB 93.1255%-122 - C1 -5A0V 13.3 ?
22 PsiBlast_CBE 92.7155%-124 - C1 -5A0T 13.4 ?
21 PsiBlast_CBE 92.5055%-122 - C1 -5A0V 10.5 ?
1 PsiBlast_PDB 92.2455%-124 * C1 *5A0T 13.5 ?
49 HHSearch 92.1956%-123 - C1 -5A0T 13.5 ?
3 PsiBlast_PDB 91.9437%-114 - C1 -3ZQ4 - RNJ1_BACSU -
50 HHSearch 91.8037%-112 - C1 -3ZQ4 - RNJ1_BACSU -
25 PsiBlast_CBE 91.7337%-116 - C1 -3ZQ4 - RNJ1_BACSU -
51 HHSearch 91.5338%-108 - C1 -3BK2 4.8 RNJ_THET2
23 PsiBlast_CBE 91.2837%-116 - C1 -3ZQ4 - RNJ1_BACSU -
27 PsiBlast_CBE 90.6938%-112 - C1 -4XWT 3.3 ?
26 PsiBlast_CBE 90.0538%-110 - C1 -4XWW 12.7 ?
4 PsiBlast_PDB 89.9838%-113 - C1 -4XWT 2.3 ?
24 PsiBlast_CBE 89.9737%-116 - C1 -3ZQ4 - RNJ1_BACSU -
6 PsiBlast_PDB 89.7037%-113 - C1 -3T3N 10.4 RNJ_THET2
52 HHSearch 89.5837%-108 - C1 -4XWW 11.6 ?
9 PsiBlast_PDB 89.4537%-109 - C1 -3BK2 4.8 RNJ_THET2
5 PsiBlast_PDB 89.4038%-109 - C1 -4XWW 11.7 ?
7 PsiBlast_PDB 89.0337%-112 - C1 -3T3O 9.7 RNJ_THET2
8 PsiBlast_PDB 88.6737%-109 - C1 -3BK1 - RNJ_THET2 -