@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2916c: (2016-05-14 )
MFESLSDRLTAALQGLRGKGRLTDADIDATTREIRLALLEADVSLPVVRAFIHRIKERARGAEVSSALNPAQQVVKIVNEELISILGGETRELAFAKTPPTVVMLAGLQGSGKTTLAGKLAARLRGQGHTPLLVACDLQRPAAVNQLQVVGERAGVPVFAPHPGASPESGPGDPVAVAAAGLAEARAKHFDVVIVDTAGRLGIDEELMAQAAAIRDAINPDEVLFVLDAMIGQDAVTTAAAFGEGVGFTGVALTKLDGDARGGAALSVREVTGVPILFASTGEKLEDFDVFHPDRMASRILGMGDVLSLIEQAEQVFDAQQAEEAAAKIGAGELTLEDFLEQMLAVRKMGPIGNLLGMLPGAAQMKDALAEVDDKQLDRVQAIIRGMTPQERADPKIINASRRLRIANGSGVTVSEVNQLVERFFEARKMMSSMLGGMGIPGIGRKSATRKSKGAKGKSGKKSKKGTRGPTPPKVKSPFGVPGMPGLAGLPGGLPDLSQMPKGLDELPPGLADFDLSKLKFPGKK

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]




GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]




GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]




GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]




GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]




GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]




GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]




CIT_B_4(1VMA)
?
[Raw transfer]




GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]




GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]




GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]




GCP_A_5(1RJ9)
SRP54_THEAQ
[Raw transfer]




GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]




GCP_D_17(1OKK)
SRP54_THEAQ
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GDP_D_17(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]




GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]




GOL_B_14(3DMD)
?
[Raw transfer]




OXY_A_3(1LS1)
SRP54_THEAQ
[Raw transfer]




FMT_B_11(1O87)
SRP54_THEAQ
[Raw transfer]




GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]




EDO_B_13(3NG1)
SRP54_THEAQ
[Raw transfer]




GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]




EDO_A_6(2J7P)
SRP54_THEAQ
[Raw transfer]




GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]




GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_D_18(4C7O)
FTSY_ECOLI
[Raw transfer]




EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]




EDO_A_12(3NG1)
SRP54_THEAQ
[Raw transfer]




EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]




EDO_B_14(3NG1)
SRP54_THEAQ
[Raw transfer]




GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




ACY_B_7(1JPN)
SRP54_THEAQ
[Raw transfer]




ACY_A_9(1JPN)
SRP54_THEAQ
[Raw transfer]




GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]




OXY_A_5(1LS1)
SRP54_THEAQ
[Raw transfer]




21 PsiBlast_CBE 89.9051%-110 - C4 -2XXA - SRP54_ECOLI -
1 PsiBlast_PDB 89.2351%-109 - C4 -2XXA - SRP54_ECOLI -
23 PsiBlast_CBE 86.2250%-102 - C5 -2FFH - SRP54_THEAQ -
73 HHSearch 86.1251% -99 - C5 -2FFH - SRP54_THEAQ -
2 PsiBlast_PDB 85.6850%-101 - C5 -2FFH - SRP54_THEAQ -
22 PsiBlast_CBE 84.8550%-100 - C5 -2FFH - SRP54_THEAQ -
75 HHSearch 80.9635%-103 - C4 -3DM5 Error SRP54_PYRFU
39 PsiBlast_CBE 80.6034%-104 - C4 -3DM5 7.0 SRP54_PYRFU
40 PsiBlast_CBE 80.3534%-103 - C4 -3DM5 Error SRP54_PYRFU
24 PsiBlast_CBE 79.9052%-109 - C4 -4C7O 4.0 SRP54_ECOLI
77 HHSearch 79.8654%-109 - C4 -4C7O 3.0 SRP54_ECOLI
4 PsiBlast_PDB 79.2352%-110 - C4 -4C7O 3.0 SRP54_ECOLI
16 PsiBlast_PDB 78.5652%-109 - C4 -1OKK 2.9 SRP54_THEAQ
18 PsiBlast_PDB 78.3552%-108 - C4 -2J7P 9.0 SRP54_THEAQ
8 PsiBlast_PDB 78.1952%-111 - C4 -2C04 - SRP54_THEAQ -
32 PsiBlast_CBE 78.1452%-109 - C4 -2J7P 9.2 SRP54_THEAQ
26 PsiBlast_CBE 78.1152%-113 - C4 -2J46 - SRP54_THEAQ -
30 PsiBlast_CBE 77.8252%-112 - C4 -1JPN 6.2 SRP54_THEAQ
80 HHSearch 77.7953%-118 - C4 -1LS1 2.8 SRP54_THEAQ
34 PsiBlast_CBE 77.7452%-107 - C4 -2CNW - SRP54_THEAQ -
14 PsiBlast_PDB 77.5352%-117 - C4 -1LS1 3.2 SRP54_THEAQ
5 PsiBlast_PDB 77.4353%-106 - C4 -1RJ9 9.1 SRP54_THEAQ
12 PsiBlast_PDB 77.3752%-109 - C4 -1JPN 6.9 SRP54_THEAQ
15 PsiBlast_PDB 77.2352%-110 - C4 -3NG1 3.7 SRP54_THEAQ
7 PsiBlast_PDB 77.1852%-109 - C4 -1O87 6.9 SRP54_THEAQ
31 PsiBlast_CBE 77.0352%-110 - C4 -3NG1 3.7 SRP54_THEAQ
11 PsiBlast_PDB 76.9452%-107 - C4 -1JPJ 7.2 SRP54_THEAQ
19 PsiBlast_PDB 76.9252%-109 - C4 -1NG1 7.1 SRP54_THEAQ
29 PsiBlast_CBE 76.6952%-106 - C4 -1O87 6.8 SRP54_THEAQ
37 PsiBlast_CBE 75.6352%-104 - C4 -2NG1 5.7 SRP54_THEAQ
79 HHSearch 70.6336%-109 - C4 -3E70 7.0 ?
90 HHSearch 68.4438%-109 - C4 -2YHS 3.3 FTSY_ECOLI
47 PsiBlast_CBE 65.9238% -96 - C4 -4C7O 5.4 FTSY_ECOLI
52 PsiBlast_CBE 65.0335%-111 - C4 -1VMA 3.9 ?
43 PsiBlast_CBE 64.3337%-106 - C4 -3DMD 3.7 ?
49 PsiBlast_CBE 64.2737% -99 - C4 -2YHS 3.3 FTSY_ECOLI
41 PsiBlast_CBE 63.8537%-107 - C4 -3E70 7.0 ?
48 PsiBlast_CBE 63.7238% -91 - C4 -4C7O 6.5 FTSY_ECOLI
56 PsiBlast_CBE 54.7835%-101 - C4 -2J7P 2.9 FTSY_THEAQ
63 PsiBlast_CBE 53.8835%-102 - C4 -1OKK 7.2 FTSY_THEAQ
68 PsiBlast_CBE 53.2234% -98 - C4 -1RJ9 2.9 FTSY_THEAQ
55 PsiBlast_CBE 53.0235% -98 - C4 -2J7P 2.9 FTSY_THEAQ
64 PsiBlast_CBE 51.1135%-108 - C4 -2IYL 4.9 FTSY_THEAQ
60 PsiBlast_CBE 50.9435%-107 - C4 -2Q9B 5.3 FTSY_THEAQ
58 PsiBlast_CBE 50.3735%-101 - C4 -2Q9C 6.4 FTSY_THEAQ