@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2936: (2016-05-15 )
MRNDDMAVVVNGVRKTYGKGKIVALDDVSFKVRRGEVIGLLGPNGAGKTTMVDILSTLTRPDAGSAIIAGYDVVSEPAGVRRSIMVTGQQVAVDDALSGEQNLVLFGRLWGLSKSAARKRAAELLEQFSLVHAGKRRVGTYSGGMRRRIDIACGLVVQPQVAFLDEPTTGLDPRSRQAIWDLVASFKKLGIATLLTTQYLEEADALSDRIILIDHGIIIAEGTANELKHRAGDTFCEIVPRDLKDLDAIVAALGSLLPEHHRAMLTPDSDRITMPAPDGIRMLVEAARRIDEARIELADIALRRPSLDHVFLAMTTDPTESLTHLVSGSAR

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4QC2)
?
[Raw transfer]



ATP_A_4(4P33)
LPTB_ECOLI
[Raw transfer]



ATP_B_9(4P33)
LPTB_ECOLI
[Raw transfer]



ATP_A_3(4QC2)
?
[Raw transfer]



ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]
2 PsiBlast_PDB 82.6037%-105 - C1 -1VPL - ? -
10 PsiBlast_PDB 77.4733%-106 - C1 -4WBS - ? -
14 PsiBlast_PDB 77.2230%-105 - C1 -1Z47 - ? -
8 PsiBlast_PDB 76.5429%-103 - C1 -4YMW - ? -
6 PsiBlast_PDB 76.1729%-104 - C1 -4YMU - ? -
4 PsiBlast_PDB 75.9729%-106 - C1 -4YMS - ? -
5 PsiBlast_PDB 75.6329%-103 - C1 -4YMT - ? -
7 PsiBlast_PDB 75.3529%-104 - C1 -4YMV - ? -
22 PsiBlast_CBE 74.9433%-101 - C1 -4WBS - ? -
51 Fugue 74.6423% -81 - C1 -1Z47 - ? -
43 HHSearch 74.5529%-106 - C1 -4RVC - ? -
34 HHSearch 74.4728%-103 * C1 *3TUI - METN_ECOLI -
47 Fugue 74.2723% -86 - C1 -1OXS - ? -
26 HHSearch 73.5630%-101 - C1 -1Z47 - ? -
16 PsiBlast_PDB 73.4628%-103 - C1 -4MKI - ECFA2_CALS4 -
40 HHSearch 73.3228%-100 - C1 -4MKI - ECFA2_CALS4 -
32 HHSearch 73.0830%-100 - C1 -1OXX - ? -
19 PsiBlast_PDB 73.0830%-105 - C1 -1OXT - ? -
46 Fugue 72.8422% -88 - C1 -3TUZ - METN_ECOLI -
9 PsiBlast_PDB 72.6836% -99 - C1 -4P32 6.2 LPTB_ECOLI
21 PsiBlast_CBE 72.3336% -98 - C1 -4P32 6.6 LPTB_ECOLI
12 PsiBlast_PDB 71.3536% -96 - C1 -4P33 7.6 LPTB_ECOLI
24 PsiBlast_CBE 70.5336% -94 - C1 -4P33 7.3 LPTB_ECOLI
11 PsiBlast_PDB 68.8836% -92 - C1 -4QC2 7.1 ?
23 PsiBlast_CBE 67.6536% -90 - C1 -4QC2 7.8 ?
1 PsiBlast_PDB 60.0737% -27 - C1 -4YER 4.8 ?
25 HHSearch 53.1336% -14 - C1 -4YER 5.8 ?
13 PsiBlast_PDB 42.1736% -20 - C1 -4P31 6.5 LPTB_ECOLI