@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2941: (2016-05-15 )
MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGSTGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHAFSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVTDGKMFIIGRIKDLLIVYGRNHSPDDIEATIQEITRGRCAAISVPGDRSTEKLVAIIELKKRGDSDQDAMARLGAIKREVTSALSSSHGLSVADLVLVAPGSIPITTSGKVRRGACVEQYRQDQFARLDA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5SV_A_3(5EY9)
FAA32_MYCMM
[Raw transfer]




1ZZ_A_2(3LNV)
?
[Raw transfer]




5SV_A_3(5EY9)
FAA32_MYCMM
[Raw transfer]




5SV_B_8(5EY9)
FAA32_MYCMM
[Raw transfer]




1ZZ_A_2(3KXW)
?
[Raw transfer]




1ZZ_A_2(3KXW)
?
[Raw transfer]




ATP_A_4(5D6J)
?
[Raw transfer]




ATP_A_4(5D6J)
?
[Raw transfer]




1 PsiBlast_PDB 94.9099%-117 - C5 -3T5A - FAA28_MYCTU -
68 Fugue 81.1238% -91 - C5 -5EY9 6.9 FAA32_MYCMM
26 PsiBlast_CBE 79.7036% -87 - C5 -5EY9 7.8 FAA32_MYCMM
50 HHSearch 79.5139% -96 - C5 -5D6J 6.4 ?
5 PsiBlast_PDB 79.0236% -87 - C5 -5EY9 8.0 FAA32_MYCMM
24 PsiBlast_CBE 78.5536% -92 - C5 -5EY8 - ? -
52 HHSearch 78.3133% -88 - C5 -3KXW 5.0 ?
23 PsiBlast_CBE 78.1236% -91 - C5 -5EY8 - ? -
3 PsiBlast_PDB 78.0336% -97 - C5 -5D6J 8.8 ?
25 PsiBlast_CBE 77.8336% -94 - C5 -5EY8 - ? -
21 PsiBlast_CBE 77.5836% -94 - C5 -5EY8 - ? -
2 PsiBlast_PDB 77.4936% -94 - C5 -5EY8 - ? -
4 PsiBlast_PDB 77.2336% -93 - C5 -5ICR - ? -
7 PsiBlast_PDB 76.7632% -92 - C5 -3LNV 5.2 ?
22 PsiBlast_CBE 76.7536% -94 - C5 -5EY8 - ? -
6 PsiBlast_PDB 76.5432% -91 - C5 -3KXW 5.0 ?
8 PsiBlast_PDB 70.8637% -99 - C5 -5D6N - ? -
9 PsiBlast_PDB 70.3430% -78 - C5 -3PBK - ? -
10 PsiBlast_PDB 66.3622% -72 - C5 -4R0M - ? -
49 HHSearch 61.2319% -74 * C5 *2D1S - LUCI_LUCCR -