@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2996c: (2016-05-15 )
MSLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAPWLDLVRKLGVLAGVLSDELPVSLSVQVRGELAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDVRAVGADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_5(2G76)
SERA_HUMAN
[Raw transfer]



NAD_A_5(2G76)
SERA_HUMAN
[Raw transfer]



NAD_B_6(2G76)
SERA_HUMAN
[Raw transfer]



NAD_D_4(1WWK)
?
[Raw transfer]



NAI_E_5(2P9G)
SERA_ECOLI
[Raw transfer]



NAP_A_7(2DBZ)
GYAR_PYRHO
[Raw transfer]



NAP_A_4(2DBQ)
GYAR_PYRHO
[Raw transfer]



NAD_C_3(1WWK)
?
[Raw transfer]



NAP_A_2(5AOV)
?
[Raw transfer]



NAD_C_3(1WWK)
?
[Raw transfer]



NAP_A_2(5AOV)
?
[Raw transfer]



NAI_G_7(2P9C)
SERA_ECOLI
[Raw transfer]



NAI_A_3(2PA3)
SERA_ECOLI
[Raw transfer]



NAP_B_8(2DBZ)
GYAR_PYRHO
[Raw transfer]



NAD_E_5(2HU2)
CTBP1_RAT
[Raw transfer]



NAI_F_6(2P9G)
SERA_ECOLI
[Raw transfer]



NAI_E_5(2P9C)
SERA_ECOLI
[Raw transfer]



NAP_A_2(3BAZ)
HPPR_PLESU
[Raw transfer]



GOL_A_8(3JTM)
FDH_ARATH
[Raw transfer]



GOL_A_14(3JTM)
FDH_ARATH
[Raw transfer]



HPV_B_6(3DDN)
SERA_MYCTU
[Raw transfer]



GOL_A_3(3K5P)
?
[Raw transfer]
3 PsiBlast_PDB 99.6899%-136 - C1 -3DDN - SERA_MYCTU -
2 PsiBlast_PDB 99.1299%-137 - C1 -3DC2 - SERA_MYCTU -
103 Fugue 99.04100%-135 - C1 -1YGY - SERA_MYCTU -
1 PsiBlast_PDB 98.8399%-135 - C1 -1YGY - SERA_MYCTU -
22 PsiBlast_CBE 97.4099%-131 - C1 -1YGY - SERA_MYCTU -
21 PsiBlast_CBE 96.9899%-131 - C1 -3DC2 - SERA_MYCTU -
23 PsiBlast_CBE 96.8299%-133 - C1 -3DDN 2.5 SERA_MYCTU
113 HHSearch 95.7896%-131 - C1 -1YGY - SERA_MYCTU -
124 HHSearch 64.2144%-124 - C1 -2G76 6.7 SERA_HUMAN
24 PsiBlast_CBE 64.1145%-124 - C1 -2G76 6.3 SERA_HUMAN
128 HHSearch 63.7543%-123 - C1 -1WWK 6.6 ?
4 PsiBlast_PDB 63.5645%-122 - C1 -2G76 6.7 SERA_HUMAN
8 PsiBlast_PDB 63.2737%-117 - C1 -2DBR - GYAR_PYRHO -
5 PsiBlast_PDB 62.9843%-124 - C1 -1WWK 6.6 ?
10 PsiBlast_PDB 62.8437%-115 - C1 -2DBQ 8.2 GYAR_PYRHO
125 HHSearch 62.6839%-114 - C1 -5AOV 6.7 ?
29 PsiBlast_CBE 62.4337%-113 - C1 -2DBR - GYAR_PYRHO -
31 PsiBlast_CBE 62.4037%-113 - C1 -2DBR - GYAR_PYRHO -
32 PsiBlast_CBE 62.3937%-115 - C1 -2DBR - GYAR_PYRHO -
27 PsiBlast_CBE 61.9137%-114 - C1 -2DBZ 6.7 GYAR_PYRHO
25 PsiBlast_CBE 61.7243%-120 - C1 -1WWK 7.0 ?
9 PsiBlast_PDB 60.9137%-111 - C1 -2DBZ 6.9 GYAR_PYRHO
6 PsiBlast_PDB 59.1140%-113 - C1 -5AOV 6.7 ?
132 HHSearch 56.6630%-107 - C1 -3JTM 2.6 FDH_ARATH
46 PsiBlast_CBE 56.1834%-111 - C1 -2HU2 6.6 CTBP1_RAT
15 PsiBlast_PDB 54.1036%-108 - C1 -2P9G 7.7 SERA_ECOLI
12 PsiBlast_PDB 54.0236%-110 - C1 -2P9C 7.2 SERA_ECOLI
36 PsiBlast_CBE 53.8736%-109 - C1 -2P9C 8.6 SERA_ECOLI
17 PsiBlast_PDB 53.5636%-115 - C1 -3K5P 2.0 ?
14 PsiBlast_PDB 53.0036%-107 - C1 -2PA3 8.8 SERA_ECOLI
37 PsiBlast_CBE 52.3236%-104 - C1 -2P9G 8.6 SERA_ECOLI
69 PsiBlast_CBE 52.1436%-114 - C1 -3BAZ 8.8 HPPR_PLESU