@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3003c: (2016-05-16 )
MSAPTKPHSPTFKPEPHSAANEPKHPAARPKHVALQQLTGAQAVIRSLEELGVDVIFGIPGGAVLPVYDPLFDSKKLRHVLVRHEQGAGHAASGYAHVTGRVGVCMATSGPGATNLVTPLADAQMDSIPVVAITGQVGRGLIGTDAFQEADISGITMPITKHNFLVRSGDDIPRVLAEAFHIAASGRPGAVLVDIPKDVLQGQCTFSWPPRMELPGYKPNTKPHSRQVREAAKLIAAARKPVLYVGGGVIRGEATEQLRELAELTGIPVVTTLMARGAFPDSHRQNLGMPGMHGTVAAVAALQRSDLLIALGTRFDDRVTGKLDSFAPEAKVIHADIDPAEIGKNRHADVPIVGDVKAVITELIAMLRHHHIPGTIEMADWWAYLNGVRKTYPLSYGPQSDGSLSPEYVIEKLGEIAGPDAVFVAGVGQHQMWAAQFIRYEKPRSWLNSGGLGTMGFAIPAAMGAKIALPGTEVWAIDGDGCFQMTNQELATCAVEGIPVKVALINNGNLGMVRQWQSLFYAERYSQTDLATHSHRIPDFVKLAEALGCVGLRCEREEDVVDVINQARAINDCPVVIDFIVGADAQVWPMVAAGTSNDEIQAARGIRPLFDDITEGHA

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

60G_B_10(5FEM)
?
[Raw transfer]




FAD_B_8(5FEM)
?
[Raw transfer]




1CS_A_7(1T9B)
ILVB_YEAST
[Raw transfer]




FAD_B_14(1N0H)
ILVB_YEAST
[Raw transfer]




FAD_A_4(5FEM)
?
[Raw transfer]




FAD_B_12(1T9B)
ILVB_YEAST
[Raw transfer]




FAD_A_10(1T9A)
ILVB_YEAST
[Raw transfer]




FAD_A_9(1T9B)
ILVB_YEAST
[Raw transfer]




1CS_B_11(1T9B)
ILVB_YEAST
[Raw transfer]




FAD_A_10(1N0H)
ILVB_YEAST
[Raw transfer]




FAD_A_4(5FEM)
?
[Raw transfer]




FAD_B_14(1T9A)
ILVB_YEAST
[Raw transfer]




FAD_B_11(1T9C)
ILVB_YEAST
[Raw transfer]




1TB_B_11(1T9A)
ILVB_YEAST
[Raw transfer]




60G_A_5(5FEM)
?
[Raw transfer]




1TB_A_7(1T9A)
ILVB_YEAST
[Raw transfer]




1SM_B_10(1T9C)
ILVB_YEAST
[Raw transfer]




CIE_B_11(1N0H)
ILVB_YEAST
[Raw transfer]




AYD_A_9(1N0H)
ILVB_YEAST
[Raw transfer]




CIE_A_7(1N0H)
ILVB_YEAST
[Raw transfer]




P22_A_12(1T9C)
ILVB_YEAST
[Raw transfer]




TPP_A_3(5AHK)
?
[Raw transfer]




TPP_B_6(5AHK)
?
[Raw transfer]




TPP_A_10(1JSC)
ILVB_YEAST
[Raw transfer]




30 HHSearch 96.6144%-106 - C6 -5FEM 13.2 ?
26 PsiBlast_CBE 96.4242%-105 - C6 -1T9B 11.1 ILVB_YEAST
21 PsiBlast_CBE 96.3342%-105 - C6 -5FEM 13.1 ?
4 PsiBlast_PDB 96.3142%-106 - C6 -1T9B 13.1 ILVB_YEAST
1 PsiBlast_PDB 96.2642%-110 - C6 -1JSC 6.2 ILVB_YEAST
24 PsiBlast_CBE 96.1942%-106 - C6 -1T9D - ILVB_YEAST -
7 PsiBlast_PDB 96.1242%-107 - C6 -5FEM 13.2 ?
5 PsiBlast_PDB 96.1142%-105 - C6 -1T9C 5.0 ILVB_YEAST
3 PsiBlast_PDB 96.0942%-103 - C6 -1T9A 13.2 ILVB_YEAST
25 PsiBlast_CBE 96.0642%-105 - C6 -1T9C 13.3 ILVB_YEAST
6 PsiBlast_PDB 96.0442%-107 - C6 -1T9D - ILVB_YEAST -
2 PsiBlast_PDB 95.8742%-105 - C6 -1N0H 12.8 ILVB_YEAST
27 PsiBlast_CBE 95.8642%-105 - C6 -1T9A 13.1 ILVB_YEAST
28 PsiBlast_CBE 95.2542%-103 - C6 -1N0H 12.5 ILVB_YEAST
22 PsiBlast_CBE 95.2442%-105 - C6 -1T9D - ILVB_YEAST -
23 PsiBlast_CBE 93.6542%-104 - C6 -1T9D - ILVB_YEAST -
34 HHSearch 87.5036% -97 * C6 *2PAN - GCL_ECOLI -
8 PsiBlast_PDB 84.2136% -97 - C6 -2PAN - GCL_ECOLI -
11 PsiBlast_PDB 81.2128% -98 - C6 -4FEG - ? -
41 HHSearch 81.0028%-103 - C6 -3EYA - POXB_ECOLI -
38 HHSearch 79.5030% -98 - C6 -5AHK 8.0 ?
29 PsiBlast_CBE 75.4633%-101 - C6 -5AHK 8.0 ?