@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3045: (2016-05-16 )
MSTVAAYAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKDGQPTQGGYSEAIVVDENYVLRIPDVLPLDVAAPLLCAGITLYSPLRHWNAGANTRVAIIGLGGLGHMGVKLGAAMGADVTVLSQSLKKMEDGLRLGAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDISAL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(3TWO)
?
[Raw transfer]




NAP_B_8(1YQX)
?
[Raw transfer]




NDP_B_6(3TWO)
?
[Raw transfer]




NDP_A_3(3TWO)
?
[Raw transfer]




NAP_A_7(1YQX)
?
[Raw transfer]




NAP_B_8(1YQD)
?
[Raw transfer]




NAP_A_7(1YQD)
?
[Raw transfer]




NDP_A_3(4OAQ)
?
[Raw transfer]




NDP_A_3(4OAQ)
?
[Raw transfer]




NAP_A_7(1PIW)
ADH6_YEAST
[Raw transfer]




NAP_A_4(1PS0)
ADH6_YEAST
[Raw transfer]




NAP_A_7(1PIW)
ADH6_YEAST
[Raw transfer]




NAP_B_8(1PIW)
ADH6_YEAST
[Raw transfer]




NAP_A_4(2CF6)
CADH5_ARATH
[Raw transfer]




EPE_B_7(4OAQ)
?
[Raw transfer]




DTT_B_10(1YQD)
?
[Raw transfer]




DTT_A_4(4OAQ)
?
[Raw transfer]




22 PsiBlast_CBE 94.7547%-107 - C1 -1YQD 12.4 ?
1 PsiBlast_PDB 94.6352%-111 - C1 -1UUF - YAHK_ECOLI -
2 PsiBlast_PDB 93.7347%-107 - C1 -1YQD - ? -
21 PsiBlast_CBE 93.3947%-106 - C1 -1YQX 12.0 ?
5 PsiBlast_PDB 92.8046%-111 - C1 -2CF5 - CADH5_ARATH -
80 HHSearch 92.6050%-109 - C1 -1UUF - YAHK_ECOLI -
3 PsiBlast_PDB 92.4147%-105 - C1 -1YQX 12.9 ?
84 HHSearch 91.1746%-103 - C1 -1YQD 12.6 ?
81 HHSearch 87.5645%-105 - C1 -2CF5 - CADH5_ARATH -
85 HHSearch 87.0143%-108 - C1 -3TWO 11.0 ?
6 PsiBlast_PDB 86.6046%-107 - C1 -2CF6 7.9 CADH5_ARATH
4 PsiBlast_PDB 86.0643%-110 - C1 -3TWO 11.0 ?
23 PsiBlast_CBE 82.5343%-106 - C1 -3TWO 10.8 ?
7 PsiBlast_PDB 78.9243%-101 - C1 -4OAQ 11.6 ?
24 PsiBlast_CBE 78.5243%-102 - C1 -4OAQ 2.2 ?
16 PsiBlast_PDB 78.0033%-103 - C1 -1LLU - ? -
87 HHSearch 77.7439% -97 - C1 -4OAQ 11.4 ?
62 PsiBlast_CBE 77.3833%-103 - C1 -1LLU - ? -
60 PsiBlast_CBE 77.0033%-103 - C1 -1LLU - ? -
25 PsiBlast_CBE 76.8036%-106 - C1 -1PIW 6.5 ADH6_YEAST
10 PsiBlast_PDB 72.9536%-101 - C1 -1PIW 6.7 ADH6_YEAST
8 PsiBlast_PDB 72.4136%-101 - C1 -1PS0 8.2 ADH6_YEAST
93 HHSearch 71.7936% -98 - C1 -1PIW 6.7 ADH6_YEAST