@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3240c: (2016-05-18 )
MLSKLLRLGEGRMVKRLKKVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQKNPETLDDLLPEAFAVAREAAWRVLDQRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIKSAQTQVEQQNFEVRKNVLKYDEVMNQQRKVIYAERRRILEGENLKDQALDMVRDVITAYVDGATGEGYAEDWDLDALWTALKTLYPVGITADSLTRKDHEFERDDLTREELLEALLKDAERAYAAREAELEEIAGEGAMRQLERNVLLNVIDRKWREHLYEMDYLKEGIGLRAMAQRDPLVEYQREGYDMFMAMLDGMKEESVGFLFNVTVEAVPAPPVAPAAEPAELAEFAAAAAAAAQQRSAVDGGARERAPSALRAKGVASESPALTYSGPAEDGSAQVQRNGGGAHKTPAGVPAGASRRERREAARRQGRGAKPPKSVKKR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_8(1M74)
SECA_BACSU
[Raw transfer]



ADP_A_2(4YS0)
SECA_THEMA
[Raw transfer]



ADP_A_3(1TF2)
SECA_BACSU
[Raw transfer]



ADP_A_2(4YS0)
SECA_THEMA
[Raw transfer]



ADP_A_3(3JUX)
SECA_THEMA
[Raw transfer]
2 PsiBlast_PDB 94.6799% -77 - C2 -1NL3 - SECA1_MYCTU -
28 HHSearch 94.35100% -78 - C2 -1NKT - SECA1_MYCTU -
21 PsiBlast_CBE 94.1399% -81 - C2 -1NKT - SECA1_MYCTU -
1 PsiBlast_PDB 93.9499% -79 - C2 -1NKT - SECA1_MYCTU -
53 Fugue 83.3953% -59 - C2 -2IPC - SECA_THET8 -
27 HHSearch 81.8853% -59 - C2 -2IPC - SECA_THET8 -
32 HHSearch 79.7049% -69 - C2 -4YS0 7.2 SECA_THEMA
19 PsiBlast_PDB 78.5543% -73 - C2 -4YS0 7.0 SECA_THEMA
20 PsiBlast_PDB 78.2943% -73 - C2 -3JUX 5.7 SECA_THEMA
6 PsiBlast_PDB 78.0748% -64 - C2 -2VDA - SECA_ECOLI -
8 PsiBlast_PDB 76.7148% -69 - C2 -1TF5 - SECA_BACSU -
52 Fugue 76.6550% -61 - C2 -1M6N - SECA_BACSU -
23 PsiBlast_CBE 76.6448% -66 - C2 -3JV2 - SECA_BACSU -
7 PsiBlast_PDB 76.6148% -67 - C2 -1TF2 5.1 SECA_BACSU
10 PsiBlast_PDB 76.1948% -63 - C2 -1M74 5.9 SECA_BACSU
9 PsiBlast_PDB 75.9948% -65 - C2 -1M6N - SECA_BACSU -
13 PsiBlast_PDB 75.9148% -66 - C2 -3JV2 - SECA_BACSU -
15 PsiBlast_PDB 75.8948% -64 - C2 -3IQY - SECA_BACSU -
11 PsiBlast_PDB 75.2848% -64 - C2 -3IQM - SECA_BACSU -
22 PsiBlast_CBE 74.9848% -74 - C2 -2FSI - SECA_ECOLI -