@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3436c: (2016-05-20 )
MCGIVGYVGRRPAYVVVMDALRRMEYRGYDSSGIALVDGGTLTVRRRAGRLANLEEAVAEMPSTALSGTTGLGHTRWATHGRPTDRNAHPHRDAAGKIAVVHNGIIENFAVLRRELETAGVEFASDTDTEVAAHLVARAYRHGETADDFVGSVLAVLRRLEGHFTLVFANADDPGTLVAARRSTPLVLGIGDNEMFVGSDVAAFIEHTREAVELGQDQAVVITADGYRISDFDGNDGLQAGRDFRPFHIDWDLAAAEKGGYEYFMLKEIAEQPAAVADTLLGHFVGGRIVLDEQRLSDQELREIDKVFVVACGTAYHSGLLAKYAIEHWTRLPVEVELASEFRYRDPVLDRSTLVVAISQSGETADTLEAVRHAKEQKAKVLAICNTNGSQIPRECDAVLYTRAGPEIGVASTKTFLAQIAANYLLGLALAQARGTKYPDEVEREYHELEAMPDLVARVIAATGPVAELAHRFAQSSTVLFLGRHVGYPVALEGALKLKELAYMHAEGFAAGELKHGPIALIEDGLPVIVVMPSPKGSATLHAKLLSNIREIQTRGAVTIVIAEEGDETVRPYADHLIEIPAVSTLLQPLLSTIPLQVFAASVARARGYDVDKPRNLAKSVTVE

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G6P_A_2(1MOR)
GLMS_ECOLI
[Raw transfer]




GLP_A_2(1MOQ)
GLMS_ECOLI
[Raw transfer]




GLP_A_2(1MOQ)
GLMS_ECOLI
[Raw transfer]




GLP_X_2(2VF5)
GLMS_ECOLI
[Raw transfer]




AGP_A_2(2ZJ4)
GFPT1_HUMAN
[Raw transfer]




AGP_A_6(1MOS)
GLMS_ECOLI
[Raw transfer]




G6P_A_2(2ZJ3)
GFPT1_HUMAN
[Raw transfer]




G6P_A_2(2ZJ3)
GFPT1_HUMAN
[Raw transfer]




G6Q_A_3(2J6H)
GLMS_ECOLI
[Raw transfer]




G6Q_B_4(2J6H)
GLMS_ECOLI
[Raw transfer]




BG6_B_4(2PUW)
GFA1_CANAL
[Raw transfer]




BG6_A_3(2PUW)
GFA1_CANAL
[Raw transfer]




GLP_A_2(1MOQ)
?
[Raw transfer]




1 PsiBlast_PDB 95.9043%-102 - C2 -4AMV - GLMS_ECOLI -
57 HHSearch 95.1044%-104 - C2 -4AMV - GLMS_ECOLI -
3 PsiBlast_PDB 95.0643%-101 - C2 -2J6H 3.5 GLMS_ECOLI
21 PsiBlast_CBE 94.4043%-102 - C2 -4AMV - GLMS_ECOLI -
26 PsiBlast_CBE 94.2643%-101 - C2 -3OOJ - GLMS_ECOLI -
25 PsiBlast_CBE 94.0143%-100 - C2 -2J6H 4.2 GLMS_ECOLI
29 PsiBlast_CBE 93.8943%-103 - C2 -3OOJ - GLMS_ECOLI -
27 PsiBlast_CBE 93.8643%-105 - C2 -3OOJ - GLMS_ECOLI -
6 PsiBlast_PDB 93.7043%-101 - C2 -3OOJ - GLMS_ECOLI -
32 PsiBlast_CBE 93.5643%-100 - C2 -3OOJ - GLMS_ECOLI -
22 PsiBlast_CBE 93.5243%-102 - C2 -4AMV - GLMS_ECOLI -
30 PsiBlast_CBE 93.4343%-103 - C2 -3OOJ - GLMS_ECOLI -
31 PsiBlast_CBE 92.9343%-102 - C2 -3OOJ - GLMS_ECOLI -
28 PsiBlast_CBE 92.8043%-106 - C2 -3OOJ - GLMS_ECOLI -
2 PsiBlast_PDB 92.1243% -98 - C2 -1JXA - GLMS_ECOLI -
24 PsiBlast_CBE 92.0843% -99 - C2 -1JXA - GLMS_ECOLI -
23 PsiBlast_CBE 88.6643% -93 - C2 -1JXA - GLMS_ECOLI -
63 HHSearch 72.7945% -99 - C2 -1MOQ 4.1 GLMS_ECOLI
8 PsiBlast_PDB 72.0245% -99 - C2 -1MOQ 4.1 GLMS_ECOLI
59 HHSearch 71.9040%-103 * C2 *2ZJ3 3.5 GFPT1_HUMAN
7 PsiBlast_PDB 71.4545% -97 - C2 -1MOS 4.2 GLMS_ECOLI
9 PsiBlast_PDB 71.0145% -97 - C2 -1MOR 3.9 GLMS_ECOLI
5 PsiBlast_PDB 70.7943% -97 - C2 -2VF5 4.0 GLMS_ECOLI
12 PsiBlast_PDB 70.5440%-106 - C2 -2ZJ3 3.5 GFPT1_HUMAN
13 PsiBlast_PDB 69.5040%-103 - C2 -2ZJ4 4.1 GFPT1_HUMAN
18 PsiBlast_PDB 65.1638%-106 - C2 -2PUW 3.2 GFA1_CANAL
36 PsiBlast_CBE 63.4538% -99 - C2 -2PUW 2.9 GFA1_CANAL
87 Fugue 52.1346%-102 - C2 -1MOQ Error ?