@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3515c: (2016-05-20 )
MAVALNIADLAEHAIDAVPDRVAVICGDEQLTYAQLEDKANRLAHHLIDQGVQKDDKVGLYCRNRIEIVIAMLGIVKAGAILVNVNFRYVEGELRYLFDNSDMVALVHERRYADRVANVLPDTPHVRTILVVEDGSDQDYRRYGGVEFYSAIAAGSPERDFGERSADAIYLLYTGGTTGFPKGVMWRHEDIYRVLFGGTDFATGEFVKDEYDLAKAAAANPPMIRYPIPPMIHGATQSATWMALFSGQTTVLAPEFNADEVWRTIHKHKVNLLFFTGDAMARPLVDALVKGNDYDLSSLFLLASTAALFSPSIKEKLLELLPNRVITDSIGSSETGFGGTSVVAAGQAHGGGPRVRIDHRTVVLDDDGNEVKPGSGMRGVIAKKGNIPVGYYKDEKKTAETFRTINGVRYAIPGDYAQVEEDGTVTMLGRGSVSINSGGEKVYPEEVEAALKGHPDVFDALVVGVPDPRYGQQVAAVVQARPGCRPSLAELDSFVRSEIAGYKVPRSLWFVDEVKRSPAGKPDYRWAKEQTEARPADDVHAGHVTSGG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_13(3ETC)
?
[Raw transfer]
44 HHSearch 91.2223% -82 * C5 *2D1S - LUCI_LUCCR -
60 HHSearch 90.6925% -88 - C5 -1MDB - DHBE_BACSU -
51 HHSearch 87.9323% -85 - C5 -4WV3 - ? -
4 PsiBlast_PDB 87.0526% -89 - C5 -1MDB - DHBE_BACSU -
5 PsiBlast_PDB 86.6626% -85 - C5 -1MDF - DHBE_BACSU -
15 PsiBlast_PDB 86.1924% -83 - C5 -4WV3 - ? -
6 PsiBlast_PDB 85.7426% -79 - C5 -1MD9 - DHBE_BACSU -
47 HHSearch 85.2923% -88 - C5 -3C5E - ACS2A_HUMAN -
14 PsiBlast_PDB 84.9925% -72 - C5 -3RG2 - ENTB_ECOLI (first) -
16 PsiBlast_PDB 83.8623% -80 - C5 -1AMU - GRSA_ANEMI -
63 Fugue 83.8223% -77 - C5 -1PG4 - ACSA_SALTY -
58 HHSearch 83.8125% -78 - C5 -4IZ6 - ENTE_ECOLI -
13 PsiBlast_PDB 83.4125% -72 - C5 -4IZ6 - ENTE_ECOLI -
52 HHSearch 82.1721% -92 - C5 -4ZXH - ? -
37 HHSearch 81.4822% -79 - C5 -1PG4 - ACSA_SALTY -
39 HHSearch 80.6322% -86 - C5 -3ETC 3.4 ?
49 HHSearch 80.5522% -91 - C5 -2VSQ - -
59 HHSearch 78.8826% -97 - C5 -3IVR - ? -
1 PsiBlast_PDB 78.7127% -91 - C5 -3IVR - ? -
46 HHSearch 78.4816% -81 - C5 -4OXI - ? -