@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3646c: (2016-05-22 )
MADPKTKGRGSGGNGSGRRLVIVESPTKARKLASYLGSGYIVESSRGHIRDLPRAASDVPAKYKSQPWARLGVNVDADFEPLYIISPEKRSTVSELRGLLKDVDELYLATDGDREGEAIAWHLLETLKPRIPVKRMVFHEITEPAIRAAAEHPRDLDIDLVDAQETRRILDRLYGYEVSPVLWKKVAPKLSAGRVQSVATRIIVARERDRMAFRSAAYWDILAKLDASVSDPDAAPPTFSARLTAVAGRRVATGRDFDSLGTLRKGDEVIVLDEGSATALAAGLDGTQLTVASAEEKPYARRPYPPFMTSTLQQEASRKLRFSAERTMSIAQRLYENGYITYMRTDSTTLSESAINAARTQARQLYGDEYVAPAPRQYTRKVKNAQEAHEAIRPAGETFATPDAVRRELDGPNIDDFRLYELIWQRTVASQMADARGMTLSLRITGMSGHQEVVFSATGRTLTFPGFLKAYVETVDELVGGEADDAERRLPHLTPGQRLDIVELTPDGHATNPPARYTEASLVKALEELGIGRPSTYSSIIKTIQDRGYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYDFTAAMEDELDEIAAGNERRTNWLNNFYFGGDHGVPDSVARSGGLKKLVGINLEGIDAREVNSIKLFDDTHGRPIYVRVGKNGPYLERLVAGDTGEPTPQRANLSDSITPDELTLQVAEELFATPQQGRTLGLDPETGHEIVAREGRFGPYVTEILPEPAADAAAAAQGVKKRQKAAGPKPRTGSLLRSMDLQTVTLEDALRLLSLPRVVGVDPASGEEITAQNGRYGPYLKRGNDSRSLVTEDQIFTITLDEALKIYAEPKRRGRQSASAPPLRELGTDPASGKPMVIKDGRFGPYVTDGETNASLRKGDDVASITDERAAELLADRRARGPAKRPARKAARKVPAKKAAKRD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

T3P_C_3(1CY8)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY2)
TOP1_ECOLI
[Raw transfer]



T3P_E_5(1CY6)
TOP1_ECOLI
[Raw transfer]



TMP_E_5(1CY4)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY1)
TOP1_ECOLI
[Raw transfer]



NACID_C_3(3PX7)
TOP1_ECOLI
[Raw transfer]
-
NACID_Y_1(1MW8)
TOP1_ECOLI
[Raw transfer]
-
1 PsiBlast_PDB 99.24100% -81 - C1 -5D5H - TOP1_MYCTU -
22 HHSearch 94.2091% -74 - C1 -5D5H - TOP1_MYCTU -
23 HHSearch 73.3935% -56 - C1 -4RUL - TOP1_ECOLI -
50 Fugue 72.3930% -42 - C1 -1GKU - RGYR_ARCFU -
8 PsiBlast_PDB 71.0742% -78 - C1 -1CY4 3.1 TOP1_ECOLI
5 PsiBlast_PDB 70.8642% -78 - C1 -1CY6 3.2 TOP1_ECOLI
11 PsiBlast_PDB 70.8142% -75 - C1 -1MW8 10.7 TOP1_ECOLI
45 Fugue 70.7737% -56 - C1 -2GAI - TOP1_THEMA -
10 PsiBlast_PDB 70.7642% -74 - C1 -3PWT - TOP1_ECOLI -
13 PsiBlast_PDB 70.7141% -82 - C1 -3PX7 15.2 TOP1_ECOLI
7 PsiBlast_PDB 70.5842% -72 - C1 -1CY0 - TOP1_ECOLI -
3 PsiBlast_PDB 70.5042% -74 - C1 -1CY1 3.2 TOP1_ECOLI
24 HHSearch 70.3937% -67 - C1 -2GAI - TOP1_THEMA -
27 HHSearch 70.3743% -69 * C1 *1MW9 - TOP1_ECOLI -
4 PsiBlast_PDB 70.1942% -76 - C1 -1CY2 3.3 TOP1_ECOLI
9 PsiBlast_PDB 70.1142% -73 - C1 -1ECL - TOP1_ECOLI -
6 PsiBlast_PDB 70.0942% -73 - C1 -1CY8 3.8 TOP1_ECOLI
12 PsiBlast_PDB 70.0742% -73 - C1 -1MW9 - TOP1_ECOLI -
2 PsiBlast_PDB 70.0339% -67 - C1 -4RUL - TOP1_ECOLI -
14 PsiBlast_PDB 69.7736% -60 - C1 -2GAI - TOP1_THEMA -