@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3800c: (2016-05-23 )
MADVAESQENAPAERAELTVPEMRQWLRNWVGKAVGKAPDSIDESVPMVELGLSSRDAVAMAADIEDLTGVTLSVAVAFAHPTIESLATRIIEGEPETDLAGDDAEDWSRTGPAERVDIAIVGLSTRFPGEMNTPEQTWQALLEGRDGITDLPDGRWSEFLEEPRLAARVAGARTRGGYLKDIKGFDSEFFAVAKTEADNIDPQQRMALELTWEALEHARIPASSLRGQAVGVYIGSSTNDYSFLAVSDPTVAHPYAITGTSSSIIANRVSYFYDFHGPSVTIDTACSSSLVAIHQGVQALRNGEADVVVAGGVNALITPMVTLGFDEIGAVLAPDGRIKSFSADADGYTRSEGGGMLVLKRVDDARRDGDAILAVIAGSAVNHDGRSNGLIAPNQDAQADVLRRAYKDAGIDPRTVDYIEAHGTGTILGDPIEAEALGRVVGRGRPADRPALLGAVKTNVGHLESAAGAASMAKVVLALQHDKLPPSINFAGPSPYIDFDAMRLKMITTPTDWPRYGGYALAGVSSFGFGGANAHVVVREVLPRDVVEKEPEPEPEPKAAAEPAEAPTLAGHALRFDEFGNIITDSAVAEEPEPELPGVTEEALRLKEAALEELAAQEVTAPLVPLAVSAFLTSRKKAAAAELADWMQSPEGQASSLESIGRSLSRRNHGRSRAVVLAHDHDEAIKGLRAVAAGKQAPNVFSVDGPVTTGPVWVLAGFGAQHRKMGKSLYLRNEVFAAWIEKVDALVQDELGYSVLELILDDAQDYGIETTQVTIFAIQIALGELLRHHGAKPAAVIGQSLGEAASAYFAGGLSLRDATRAICSRSHLMGEGEAMLFGEYIRLMALVEYSADEIREVFSDFPDLEVCVYAAPTQTVIGGPPEQVDAILARAEAEGKFARKFATKGASHTSQMDPLLGELTAELQGIKPTSPTCGIFSTVHEGRYIKPGGEPIHDVEYWKKGLRHSVYFTHGIRNAVDSGHTTFLELAPNPVALMQVALTTADAGLHDAQLIPTLARKQDEVSSMVSTMAQLYVYGHDLDIRTLFSRASGPQDYANIPPTRFKRKEHWLPAHFSGDGSTYMPGTHVALPDGRHVWEYAPRDGNVDLAALVRAAAAHVLPDAQLTAAEQRAVPGDGARLVTTMTRHPGGASVQVHARIDESFTLVYDALVSRAGSESVLPTAVGAATAIAVADGAPVAPETPAEDADAETLSDSLTTRYMPSGMTRWSPDSGETIAERLGLIVGSAMGYEPEDLPWEVPLIELGLDSLMAVRIKNRVEYDFDLPPIQLTAVRDANLYNVEKLIEYAVEHRDEVQQLHEHQKTQTAEEIARAQAELLHGKVGKTEPVDSEAGVALPSPQNGEQPNPTGPALNVDVPPRDAAERVTFATWAIVTGKSPGGIFNELPRLDDEAAAKIAQRLSERAEGPITAEDVLTSSNIEALADKVRTYLEAGQIDGFVRTLRARPEAGGKVPVFVFHPAGGSTVVYEPLLGRLPADTPMYGFERVEGSIEERAQQYVPKLIEMQGDGPYVLVGWSLGGVLAYACAIGLRRLGKDVRFVGLIDAVRAGEEIPQTKEEIRKRWDRYAAFAEKTFNVTIPAIPYEQLEELDDEGQVRFVLDAVSQSGVQIPAGIIEHQRTSYLDNRAIDTAQIQPYDGHVTLYMADRYHDDAIMFEPRYAVRQPDGGWGEYVSDLEVVPIGGEHIQAIDEPIIAKVGEHMSRALGQIEADRTSEVGKQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_9(3TZW)
?
[Raw transfer]



CHAIN_C_3(3TZZ)
?
[Raw transfer]
-
CHAIN_C_3(3TZX)
?
[Raw transfer]
-
CHAIN_D_4(3TZY)
?
[Raw transfer]
-
CHAIN_D_4(3TZY)
?
[Raw transfer]
-
CHAIN_D_4(3TZX)
?
[Raw transfer]
-
CHAIN_D_2(3TZW)
?
[Raw transfer]
-
CHAIN_C_3(3TZY)
?
[Raw transfer]
-
40 HHSearch 82.5337% -67 - C2 -2HG4 - ERYA3_SACER -
64 Fugue 81.7537% -63 - C2 -2QO3 - ERYA2_SACER -
38 HHSearch 81.3537% -69 - C2 -5BP1 - ? -
5 PsiBlast_PDB 81.3436% -75 - C2 -5BP1 - ? -
3 PsiBlast_PDB 77.9699% -88 - C2 -3TZY 4.1 ?
22 PsiBlast_CBE 77.8899% -87 - C2 -3TZY 4.3 ?
4 PsiBlast_PDB 77.6799% -86 - C2 -3TZZ - ? -
23 PsiBlast_CBE 77.5799% -86 - C2 -3TZX 4.0 ?
21 PsiBlast_CBE 77.4599% -85 - C2 -3TZZ 4.3 ?
1 PsiBlast_PDB 77.2899% -86 - C2 -3TZW 4.9 ?
2 PsiBlast_PDB 77.2199% -84 - C2 -3TZX 4.2 ?
55 HHSearch 76.42100% -90 - C2 -3TZY 4.1 ?
41 HHSearch 74.2928% -59 - C2 -3HHD - FAS_HUMAN -
66 Fugue 72.8622% -54 - C2 -2VZ8 - ? -
42 HHSearch 72.3629% -61 * C2 *2VZ8 - ? -
48 HHSearch 60.7039% -47 - C2 -4NA1 - PKSJ_BACSU -
46 HHSearch 60.0234% -57 - C2 -4OQJ - ? -
45 HHSearch 59.9137% -48 - C2 -5E5N - PKSL_BACSU -
53 HHSearch 59.6240% -46 - C2 -4QYR - ? -
49 HHSearch 59.3338% -45 - C2 -5ERB - ? -