@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0004: (2015-12-17 )
MSENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWEQVYHHGVPQFPLREVGETDGSGTEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKEELFKYEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFRSALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPGLSGAALEKLVNEYRGVIATLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTAAEKSGLTYKASLREDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGERKRPISAFKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALAVSNLDV

Atome Classification :

(74 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




DOO_A_5(4KFG)
GYRB_ECOLI
[Raw transfer]




DOO_B_7(4KFG)
GYRB_ECOLI
[Raw transfer]




DOO_B_12(4KQV)
?
[Raw transfer]




DOO_A_2(4K4O)
?
[Raw transfer]




920_A_2(4KSG)
?
[Raw transfer]




DOO_A_5(4KQV)
?
[Raw transfer]




1A0_A_2(4HXW)
?
[Raw transfer]




XAM_C_7(4URM)
?
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




RLI_B_4(4DUH)
GYRB_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




B46_A_2(3G7E)
GYRB_ECOLI
[Raw transfer]




1YP_A_2(4LPB)
?
[Raw transfer]




CJC_A_3(4HYM)
?
[Raw transfer]




1A1_D_11(4HYP)
GYRB_ECOLI
[Raw transfer]




19X_B_4(4HY1)
?
[Raw transfer]




1A1_C_9(4HYP)
GYRB_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
?
[Raw transfer]




28G_A_2(4MBC)
?
[Raw transfer]




2B7_A_2(4MOT)
?
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




XAM_B_6(4URM)
?
[Raw transfer]




B47_A_3(3G7B)
GYRB_STAAU
[Raw transfer]




B47_B_4(3G7B)
GYRB_STAAU
[Raw transfer]




B5U_B_5(4B6C)
GYRB_MYCSM
[Raw transfer]




XAM_A_5(4URM)
?
[Raw transfer]




1A1_A_5(4HYP)
GYRB_ECOLI
[Raw transfer]




883_B_4(4P8O)
GYRB_STAAR
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




28F_A_3(4MB9)
?
[Raw transfer]




883_A_3(4P8O)
GYRB_STAAR
[Raw transfer]




NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]




08B_A_3(3U2D)
GYRB_STAAU
[Raw transfer]




1A1_B_7(4HYP)
GYRB_ECOLI
[Raw transfer]




XAM_D_8(4URM)
?
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




07N_A_3(3TTZ)
GYRB_STAAU
[Raw transfer]




08B_B_6(3U2D)
GYRB_STAAU
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCSM
[Raw transfer]




087_B_7(3U2K)
GYRB_STAAU
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




NOV_B_2(1AJ6)
GYRB_ECOLI
[Raw transfer]




TTJ_A_2(5BOD)
?
[Raw transfer]




B48_B_4(3G75)
GYRB_STAAU
[Raw transfer]




087_A_3(3U2K)
GYRB_STAAU
[Raw transfer]




19Y_A_3(4HXZ)
?
[Raw transfer]




0RA_A_2(4EM7)
?
[Raw transfer]




B48_A_3(3G75)
GYRB_STAAU
[Raw transfer]




NOV_A_4(4URN)
?
[Raw transfer]




NOV_B_5(4URN)
?
[Raw transfer]




NOV_C_6(4URN)
?
[Raw transfer]




07N_B_6(3TTZ)
GYRB_STAAU
[Raw transfer]




4S4_A_2(4ZVI)
?
[Raw transfer]




3 PsiBlast_PDB 90.0273% -70 - C3 -4WUD - GYRB_ECOLI -
9 PsiBlast_PDB 89.5573% -79 - C3 -4ZVI 5.8 ?
1 PsiBlast_PDB 89.5473% -68 - C3 -4WUB - GYRB_ECOLI -
4 PsiBlast_PDB 89.3173% -68 - C3 -4XTJ - GYRB_ECOLI -
2 PsiBlast_PDB 88.9373% -67 - C3 -4WUC - GYRB_ECOLI -
6 PsiBlast_PDB 88.1973% -73 - C3 -4PRV - GYRB_ECOLI -
137 Fugue 87.5373% -69 - C3 -1EI1 8.3 GYRB_ECOLI
136 Fugue 87.5073% -68 - C3 -1EI1 8.3 GYRB_ECOLI
21 PsiBlast_CBE 86.9573% -69 - C3 -1EI1 8.6 GYRB_ECOLI
7 PsiBlast_PDB 86.7073% -70 - C3 -4PU9 - GYRB_ECOLI -
8 PsiBlast_PDB 86.6973% -69 - C3 -1EI1 - GYRB_ECOLI -
12 PsiBlast_PDB 79.0142% -68 - C3 -3ZKB - GYRB_MYCTU -
44 PsiBlast_CBE 78.1342% -67 - C3 -3ZKB - GYRB_MYCTU -
25 PsiBlast_CBE 78.0142% -62 - C3 -3ZKD - GYRB_MYCTU -
116 HHSearch 77.7947% -71 - C3 -1KIJ 7.0 ?
27 PsiBlast_CBE 77.7842% -67 - C3 -3ZKD - GYRB_MYCTU -
43 PsiBlast_CBE 77.7442% -64 - C3 -3ZKB - GYRB_MYCTU -
26 PsiBlast_CBE 77.7442% -69 - C3 -3ZKD - GYRB_MYCTU -
42 PsiBlast_CBE 77.4142% -66 - C3 -3ZKB - GYRB_MYCTU -
29 PsiBlast_CBE 77.4142% -66 - C3 -3ZKD - GYRB_MYCTU -
50 PsiBlast_CBE 72.5736% -67 - C3 -1S16 10.0 PARE_ECOLI
18 PsiBlast_PDB 72.0236% -67 - C3 -1S16 9.8 PARE_ECOLI
117 HHSearch 71.2436% -67 - C3 -1S16 9.8 PARE_ECOLI
20 PsiBlast_PDB 68.9035% -68 - C3 -4HYM 6.8 ?
19 PsiBlast_PDB 67.5335% -74 - C3 -4HXZ 5.1 ?
52 PsiBlast_CBE 67.5235% -72 - C3 -4KQV 6.2 ?
16 PsiBlast_PDB 59.3474% -76 - C3 -4KFG 7.3 GYRB_ECOLI
11 PsiBlast_PDB 59.2374% -81 - C3 -1AJ6 5.8 GYRB_ECOLI
17 PsiBlast_PDB 58.8574% -72 - C3 -3G7E 7.5 GYRB_ECOLI
47 PsiBlast_CBE 58.3474% -80 - C3 -4HYP 6.7 GYRB_ECOLI
48 PsiBlast_CBE 58.1174% -79 - C3 -4HYP 7.0 GYRB_ECOLI
22 PsiBlast_CBE 57.4474% -75 - C3 -4DUH 6.9 GYRB_ECOLI
10 PsiBlast_PDB 57.3474% -73 - C3 -4DUH 6.7 GYRB_ECOLI
15 PsiBlast_PDB 56.6674% -82 - C3 -4HYP 6.8 GYRB_ECOLI
49 PsiBlast_CBE 56.0674% -79 - C3 -4HYP 6.9 GYRB_ECOLI
46 PsiBlast_CBE 55.7074% -76 - C3 -4KFG 7.5 GYRB_ECOLI
62 PsiBlast_CBE 54.3856% -68 - C3 -4URM 9.7 ?
72 PsiBlast_CBE 54.2748% -73 - C3 -4LPB 6.4 ?
71 PsiBlast_CBE 53.8048% -74 - C3 -4MB9 4.6 ?
68 PsiBlast_CBE 53.5848% -75 - C3 -5BOD 5.2 ?
60 PsiBlast_CBE 53.4156% -70 - C3 -4URM 8.6 ?
61 PsiBlast_CBE 53.3356% -69 - C3 -4URM 9.1 ?
103 PsiBlast_CBE 53.2855% -74 - C3 -4HXW 7.0 ?
70 PsiBlast_CBE 53.0648% -74 - C3 -4MBC 5.4 ?
54 PsiBlast_CBE 52.9152% -76 - C3 -4BAE 7.6 GYRB_MYCSM
73 PsiBlast_CBE 52.6648% -72 - C3 -4EM7 5.0 ?
101 PsiBlast_CBE 52.5855% -70 - C3 -4KSG 7.6 ?
102 PsiBlast_CBE 52.4755% -70 - C3 -4K4O 7.6 ?
69 PsiBlast_CBE 52.0848% -72 - C3 -4MOT 5.5 ?
57 PsiBlast_CBE 51.9156% -59 - C3 -4URO 6.3 GYRB_STAAU
59 PsiBlast_CBE 51.6756% -65 - C3 -4URM 9.0 ?
58 PsiBlast_CBE 51.4856% -64 - C3 -4URO 6.1 GYRB_STAAU
76 PsiBlast_CBE 51.0451% -73 - C3 -4URN 5.1 ?
56 PsiBlast_CBE 50.7956% -61 - C3 -4URO 5.9 GYRB_STAAU
55 PsiBlast_CBE 50.3956% -68 - C3 -4URO 6.0 GYRB_STAAU
125 HHSearch 49.8445% -70 * C3 *3FV5 5.9 PARE_ECOLI
104 PsiBlast_CBE 49.4847% -60 - C3 -4P8O 7.1 GYRB_STAAR
105 PsiBlast_CBE 49.2347% -60 - C3 -4P8O 7.1 GYRB_STAAR
53 PsiBlast_CBE 49.1735% -70 - C3 -4HY1 6.3 ?
106 PsiBlast_CBE 48.7148% -60 - C3 -3G7B 5.9 GYRB_STAAU
74 PsiBlast_CBE 48.6251% -69 - C3 -4URN 5.1 ?
88 PsiBlast_CBE 48.5347% -56 - C3 -3TTZ 6.1 GYRB_STAAU
140 Fugue 48.4572% -46 - C3 -1EI1 Error GYRB_ECOLI
87 PsiBlast_CBE 48.3047% -61 - C3 -3TTZ 6.1 GYRB_STAAU
85 PsiBlast_CBE 48.1647% -60 - C3 -3U2D 5.6 GYRB_STAAU
86 PsiBlast_CBE 48.0247% -55 - C3 -3U2D 5.4 GYRB_STAAU
83 PsiBlast_CBE 47.9847% -60 - C3 -3U2K 6.8 GYRB_STAAU
75 PsiBlast_CBE 47.4851% -66 - C3 -4URN 5.4 ?
84 PsiBlast_CBE 47.4347% -54 - C3 -3U2K 6.4 GYRB_STAAU
107 PsiBlast_CBE 47.2148% -56 - C3 -3G7B 5.6 GYRB_STAAU
108 PsiBlast_CBE 47.0648% -67 - C3 -3G75 4.1 GYRB_STAAU
109 PsiBlast_CBE 46.9048% -62 - C3 -3G75 4.1 GYRB_STAAU
51 PsiBlast_CBE 44.4335% -62 - C3 -4KQV 6.7 ?
110 PsiBlast_CBE 43.4444% -60 - C3 -4B6C 7.2 GYRB_MYCSM