@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0025: (2015-12-18 )
MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFPGFARRFFEQGKGANVTVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDGAGLLRDLTANAGVELRGKRVLLLGAGGAVRGVLEPFLGECPAELLIANRTARKAVDLAERFADLGAVHGCGFAEVEGPFDLIVNGTSASLAGDVPPLAQSVIEPGRTVCYDMMYAKEPTAFNRWAAERGAARTLDGLGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLATV

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_21(1NYT)
AROE_ECOLI
[Raw transfer]




NAP_A_19(1NYT)
AROE_ECOLI
[Raw transfer]




NAP_A_19(1NYT)
AROE_ECOLI
[Raw transfer]




NAP_C_9(2HK9)
AROE_AQUAE
[Raw transfer]




NAP_D_11(2HK9)
AROE_AQUAE
[Raw transfer]




NAP_B_7(2HK9)
AROE_AQUAE
[Raw transfer]




NAP_C_22(1NYT)
AROE_ECOLI
[Raw transfer]




NAP_D_23(1NYT)
AROE_ECOLI
[Raw transfer]




NDP_B_6(3SEF)
AROE_VIBCH
[Raw transfer]




NAP_A_5(1NVT)
AROE_METJA
[Raw transfer]




NDP_B_6(3PHI)
AROE_HELPY
[Raw transfer]




NDP_A_5(3SEF)
AROE_VIBCH
[Raw transfer]




NDP_A_4(3PHI)
AROE_HELPY
[Raw transfer]




ATR_A_5(2HK9)
AROE_AQUAE
[Raw transfer]




ATR_C_3(1P77)
AROE_HAEIN
[Raw transfer]




ATR_C_3(1P77)
AROE_HAEIN
[Raw transfer]




SKM_B_4(4FR5)
AROE_HELPY
[Raw transfer]




DHK_B_4(3PHJ)
AROE_HELPY
[Raw transfer]




SKM_D_8(3PGJ)
AROE_VIBCH
[Raw transfer]




SKM_C_7(3PGJ)
AROE_VIBCH
[Raw transfer]




SKM_B_4(4FQ8)
AROE_HELPY
[Raw transfer]




SKM_B_6(3PGJ)
AROE_VIBCH
[Raw transfer]




SKM_A_2(3PHH)
AROE_HELPY
[Raw transfer]




SKM_A_3(4FSH)
AROE_HELPY
[Raw transfer]




SKM_A_2(4FOS)
AROE_HELPY
[Raw transfer]




SKM_A_2(3PHH)
AROE_HELPY
[Raw transfer]




SKM_A_3(4FR5)
AROE_HELPY
[Raw transfer]




DHK_A_3(3PHJ)
AROE_HELPY
[Raw transfer]




SKM_C_8(3SEF)
AROE_VIBCH
[Raw transfer]




SKM_A_3(4FQ8)
AROE_HELPY
[Raw transfer]




SKM_B_6(2EV9)
AROE_THET8
[Raw transfer]




SKM_A_5(2EV9)
AROE_THET8
[Raw transfer]




SKM_A_2(3DOO)
AROE_STAEQ
[Raw transfer]




SKM_A_7(2D5C)
AROE_THET8
[Raw transfer]




SKM_B_8(2D5C)
AROE_THET8
[Raw transfer]




SKM_A_7(2D5C)
AROE_THET8
[Raw transfer]




SKM_A_6(2HK9)
AROE_AQUAE
[Raw transfer]




DTV_A_20(1NYT)
AROE_ECOLI
[Raw transfer]




1 PsiBlast_PDB 98.9570%-103 - C7 -4OMU - ? -
21 PsiBlast_CBE 97.1870%-102 - C7 -4OMU - ? -
28 PsiBlast_CBE 92.3253%-100 - C7 -1NYT 11.0 AROE_ECOLI
29 PsiBlast_CBE 92.0353%-101 - C7 -1NYT 11.2 AROE_ECOLI
30 PsiBlast_CBE 91.7153% -95 - C7 -1NYT 11.3 AROE_ECOLI
5 PsiBlast_PDB 90.5053% -97 - C7 -1NYT 11.1 AROE_ECOLI
24 PsiBlast_CBE 90.3755% -96 - C7 -3PGJ 3.1 AROE_VIBCH
3 PsiBlast_PDB 90.1955%-101 - C7 -3SEF 7.3 AROE_VIBCH
2 PsiBlast_PDB 90.0855%-100 - C7 -3PGJ - AROE_VIBCH -
23 PsiBlast_CBE 90.0055% -96 - C7 -3SEF 8.9 AROE_VIBCH
25 PsiBlast_CBE 89.3555% -95 - C7 -3PGJ 3.6 AROE_VIBCH
26 PsiBlast_CBE 88.8455% -96 - C7 -3PGJ 3.2 AROE_VIBCH
65 HHSearch 88.6854%-101 - C7 -3O8Q - ? -
67 HHSearch 88.4153% -94 - C7 -1NYT 11.1 AROE_ECOLI
4 PsiBlast_PDB 88.2255% -98 - C7 -3O8Q - ? -
22 PsiBlast_CBE 87.7355%-102 - C7 -3SEF 2.6 AROE_VIBCH
6 PsiBlast_PDB 87.5350%-101 - C7 -3PWZ - ? -
66 HHSearch 86.8549% -98 - C7 -3PWZ - ? -
8 PsiBlast_PDB 85.2044% -99 - C7 -1P77 6.5 AROE_HAEIN
7 PsiBlast_PDB 83.0844% -95 - C7 -1P74 - AROE_HAEIN -
69 HHSearch 82.7945% -93 - C7 -1P77 6.6 AROE_HAEIN
31 PsiBlast_CBE 73.6836% -94 - C7 -2HK9 10.6 AROE_AQUAE
71 HHSearch 72.6330% -92 - C7 -1NVT 8.5 AROE_METJA
33 PsiBlast_CBE 72.6136% -94 - C7 -2HK9 9.7 AROE_AQUAE
11 PsiBlast_PDB 71.0436% -94 - C7 -2HK9 3.6 AROE_AQUAE
40 PsiBlast_CBE 70.4633% -89 - C7 -3PHJ 3.9 AROE_HELPY
32 PsiBlast_CBE 70.4136% -95 - C7 -2HK9 10.3 AROE_AQUAE
16 PsiBlast_PDB 70.2534% -81 - C7 -2D5C 3.6 AROE_THET8
76 HHSearch 69.7335% -87 * C7 *2HK9 6.9 AROE_AQUAE
36 PsiBlast_CBE 69.7234% -83 - C7 -2D5C 3.6 AROE_THET8
46 PsiBlast_CBE 69.5832% -82 - C7 -4FR5 3.4 AROE_HELPY
42 PsiBlast_CBE 69.5633% -84 - C7 -3PHI 7.8 AROE_HELPY
43 PsiBlast_CBE 69.1033% -79 - C7 -4FQ8 3.5 AROE_HELPY
35 PsiBlast_CBE 68.9834% -80 - C7 -2EV9 3.2 AROE_THET8
44 PsiBlast_CBE 68.8733% -77 - C7 -4FQ8 3.2 AROE_HELPY
17 PsiBlast_PDB 68.8734% -79 - C7 -2EV9 3.3 AROE_THET8
13 PsiBlast_PDB 68.7532% -90 - C7 -3DOO 3.1 AROE_STAEQ
20 PsiBlast_PDB 68.7033% -84 - C7 -3PHH 4.1 AROE_HELPY
64 HHSearch 68.5436% -76 - C7 -2D5C 3.6 AROE_THET8
39 PsiBlast_CBE 68.1833% -88 - C7 -3PHJ 3.8 AROE_HELPY
48 PsiBlast_CBE 67.8832% -76 - C7 -4FSH 3.6 AROE_HELPY
41 PsiBlast_CBE 67.1733% -81 - C7 -3PHI 8.8 AROE_HELPY
47 PsiBlast_CBE 67.1232% -75 - C7 -4FR5 3.3 AROE_HELPY
45 PsiBlast_CBE 66.6332% -80 - C7 -4FOS 3.5 AROE_HELPY
75 HHSearch 66.2233% -70 - C7 -3PHH 4.1 AROE_HELPY