@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0044: (2015-12-19 )
MHIQSSQQNPSFVAELSQAVAGRLGQVEARQVATPREAQQLAQRQEAPKGEGLLSRLGAALARPFVAIIEWLGKLLGSRAHAATQAPLSRQDAPPAASLSAAEIKQMMLQKALPLTLGGLGKASELATLTAERLAKDHTRLASGDGALRSLATALVGIRDGSRIEASRTQAARLLEQSVGGIALQQWGTAGGAASQHVLSASPEQLREIAVQLHAVMDKVALLRHAVESEVKGEPVDKALADGLVEHFGLEAEQYLGEHPDGPYSDAEVMALGLYTNGEYQHLNRSLRQGRELDAGQALIDRGMSAAFEKSGPAEQVVKTFRGTQGRDAFEAVKEGQVGHDAGYLSTSRDPGVARSFAGQGTITTLFGRSGIDVSEISIEGDEQEILYDKGTDMRVLLSAKDGQGVTRRVLEEATLGERSGHGEGLLDALDLATGTDRSGKPQEQDLRLRMRGLDLA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_C_6(1HE1)
?
[Raw transfer]




GDP_C_6(1HE1)
?
[Raw transfer]




GDP_C_6(1HE1)
?
[Raw transfer]




GDP_D_11(1HE1)
?
[Raw transfer]




GDP_C_6(1HE1)
?
[Raw transfer]




AF3_C_7(1HE1)
?
[Raw transfer]




AF3_D_12(1HE1)
?
[Raw transfer]




20 PsiBlast_CBE 87.4574% -91 - C4 -1HE1 3.0 ?
22 HHSearch 86.7074% -87 - C4 -1HE1 3.0 ?
2 PsiBlast_PDB 86.6974% -88 - C4 -1HE1 3.0 ?
44 Fugue 86.4572% -86 - C4 -1HE1 3.0 ?
43 Fugue 86.4572% -86 * C4 *1HE1 3.0 ?
21 HHSearch 81.5170% -70 - C4 -1R4T - ? -
1 PsiBlast_PDB 81.1674% -72 - C4 -1R4T - ? -
52 Fugue 71.5616% -1 - C3 -1QS1 - ? -
51 Fugue 68.7312% 11 - C3 -3BUZ - ? -
17 PsiBlast_PDB 65.5625% -14 - C3 -2WN8 - ? -
14 PsiBlast_PDB 64.7725% -6 - C3 -2WN4 - ? -
16 PsiBlast_PDB 64.6325% -12 - C3 -2WN7 - ? -
13 PsiBlast_PDB 64.3625% -10 - C3 -2WN6 - ? -
15 PsiBlast_PDB 63.3725% -13 - C3 -2WN5 - ? -
30 HHSearch 62.4319% -6 - C3 -2WN4 - ? -
6 PsiBlast_PDB 60.7825% -85 - C4 -1G4U - -
28 HHSearch 59.5126% -18 - C3 -3BW8 - ARC3_CLOLM -
32 HHSearch 59.4624% 2 * C3 *1QS1 - ? -
49 Fugue 59.1821% 3 - C3 -1QS1 - ? -
3 PsiBlast_PDB 57.7274% 42 - C4 -1HE9 - ? -