@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0073: (2015-12-20 )
MILRLHEVARSHGAGRQRYRLRVPALELRAGRQLAIVGPSGCGKSTLLDLLALALAPDPGGRFEFLAGERPQDIAALWRDGRQDRLAALRRQHCGYVLQSGGLLEFLDVRRNIGLPCALLGAPSAERVQALAERLEIGDQLDKKPAALSVGQRQRVAIARALAHAPRLLLADEPTAALDPLNAERVMRLLVEQARERGACTVVATHDERLARAAGLEVLAIRWQREADDSVGACLEEVG

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




138 HHSearch 85.3235%-100 - C1 -2PCJ - LOLD_AQUAE -
114 Fugue 85.0430% -98 - C1 -3TUZ - METN_ECOLI -
1 PsiBlast_PDB 83.7634% -97 - C1 -1L2T - Y796_METJA -
136 HHSearch 82.7429%-102 - C1 -3GFO - ECFA3_CLOP1 -
21 PsiBlast_CBE 82.3834% -98 - C1 -1L2T - Y796_METJA -
2 PsiBlast_PDB 81.7934% -96 - C1 -3TIF - Y796_METJA -
5 PsiBlast_PDB 81.2535% -94 - C1 -1F3O - Y796_METJA -
125 HHSearch 80.7531%-103 - C1 -3TUI - METN_ECOLI -
22 PsiBlast_CBE 80.1234% -99 - C1 -3TIF - Y796_METJA -
13 PsiBlast_PDB 79.9933%-109 - C1 -3TUI - METN_ECOLI -
14 PsiBlast_PDB 79.1533%-111 - C1 -3TUZ - METN_ECOLI -
28 PsiBlast_CBE 79.1033%-108 - C1 -3TUZ - METN_ECOLI -
30 PsiBlast_CBE 78.6133%-107 - C1 -3TUI - METN_ECOLI -
51 PsiBlast_CBE 78.5031%-108 - C1 -3GFO - ECFA3_CLOP1 -
112 Fugue 78.4928% -86 - C1 -1Z47 - ? -
6 PsiBlast_PDB 78.3833%-112 - C1 -3DHW - METN_ECOLI -
126 HHSearch 78.3431% -94 - C1 -3FVQ - FBPC_NEIG1 -
31 PsiBlast_CBE 78.0233%-108 - C1 -3TUI - METN_ECOLI -
27 PsiBlast_CBE 77.5833%-107 - C1 -3TUZ - METN_ECOLI -
3 PsiBlast_PDB 77.2039% -92 - C1 -2PCJ - LOLD_AQUAE -
26 PsiBlast_CBE 75.7834%-100 - C1 -4YMU 4.1 ?
10 PsiBlast_PDB 75.5834%-100 - C1 -4YMU 4.5 ?
25 PsiBlast_CBE 73.8734% -97 - C1 -4YMV 3.1 ?
11 PsiBlast_PDB 72.8534%-103 - C1 -4YMV 3.6 ?