@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0140: (2015-12-23 )
MLDANLKTQLKAYLEKVSQPFEIVASLDDSDKSRELLGLLQDIVGLTDKITLKTDGSDARKPSFSLNRPGADIGLRFAGIPMGHEFTSLVLALLQVGGHPSKLDADVIEQVKGIEGTFEFETYFSLSCQNCPDVVQALNLMAVLNPNIRHVAIDGALFQDEVEARQIMSVPSIYLNGEVFGQGRMGVEEILAKIDTGAAARDAEKLTARDAFDVLVVGGGPAGAAAAIYAARKGIRTGVAAERFGGQVLDTMAIENFISVQETEGPKLARALEEHVRHYEVDIMNLQRASKLVPAKNAGELHEVRFESGGSLKAKTLILATGARWREMGVPGEQEYKAKGVCFCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVAHVTLLEFDSKLRADAVLQRKLYSLPNVEVITSALTSEVKGDGQKVTGLVYKDRNSEEFKSIELEGIFVQIGLLPNTEWLKGSVELSPRGEIIVDARGETSLPGIFAAGDVTTVPYKQIVIAVGEGAKASLSAFDHLIRTSAPE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_2(4YKF)
?
[Raw transfer]



FAD_A_2(4YKG)
?
[Raw transfer]



FAD_A_5(1HYU)
AHPF_SALTY
[Raw transfer]



FAD_G_7(1FL2)
AHPF_ECOLI
[Raw transfer]



FAD_G_7(1FL2)
AHPF_ECOLI
[Raw transfer]



FAD_A_5(1HYU)
AHPF_SALTY
[Raw transfer]



FAD_A_5(1HYU)
AHPF_SALTY
[Raw transfer]
1 PsiBlast_PDB 89.6866%-110 - C2 -4YKF 12.4 ?
3 PsiBlast_PDB 89.2466%-110 - C2 -4YKG 12.7 ?
69 HHSearch 87.7366%-101 - C2 -1HYU 13.2 AHPF_SALTY
2 PsiBlast_PDB 87.6665%-101 - C2 -1HYU 13.2 AHPF_SALTY
60 Fugue 87.4365%-101 - C2 -1HYU 13.2 AHPF_SALTY
71 HHSearch 62.6869% -97 - C2 -1FL2 12.7 AHPF_ECOLI
4 PsiBlast_PDB 62.6869% -97 - C2 -1FL2 12.7 AHPF_ECOLI
5 PsiBlast_PDB 56.6461%-125 * C4 *1ZYN - AHPF_SALTY -
6 PsiBlast_PDB 56.0761%-127 - C4 -1ZYP - AHPF_SALTY -
29 PsiBlast_CBE 52.4134% -92 - C2 -3F8D - ? -
30 PsiBlast_CBE 52.0434% -90 - C2 -3F8D - ? -
28 PsiBlast_CBE 51.8834% -89 - C2 -3F8D - ? -
10 PsiBlast_PDB 51.4134% -90 - C2 -3F8D - ? -
27 PsiBlast_CBE 51.3134% -89 - C2 -3F8P - ? -
23 PsiBlast_CBE 51.1734% -91 - C2 -3F8R - ? -
25 PsiBlast_CBE 51.0734% -89 - C2 -3F8P - ? -
24 PsiBlast_CBE 50.9034% -86 - C2 -3F8R - ? -
26 PsiBlast_CBE 50.8834% -88 - C2 -3F8P - ? -
22 PsiBlast_CBE 50.8434% -88 - C2 -3F8R - ? -
8 PsiBlast_PDB 50.8334% -90 - C2 -3F8P - ? -