@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0178: (2015-12-25 )
MPQDMSQFLQVFFEETEEHLATLELLLIGLDLDRPDSETLHGIFRAAHSIKGSSGMFGFDDITAVTHELETLLDRIRCGQMHLRPDMISSFLEARDVLQRLLDAHRSGRPDPGVPLLETVERLRGWLRVPEQEAAEEGFGLFDDAPARETADDDAFGFFDEGPGAPERAAAPEAFGLFDEAPGAPAASEAFGLFDEAPGSPPAEERAFGLFDGAPGSPAAPSAPAQAVAAPARGAVAPVRGDGESGSIRVSVEKIDSLINLVGELVITQAMLGQLGEQLDPSRHERLQHALAQLEHNTRDLQESVMSIRMLPINFIFSRFPRLVRDTATRLGKQVELHLHGEHTELDKSVIEKLSDPLTHIVRNSIDHGIETPAERLAAGKPASGTVKLAASHQGGSVVVEVSDDGRGLSRPRILAKARERNLPVHDGMSDAEVWQLVFMPGFSTAETVTELSGRGVGMDVVKRNIGAMGGRIDIDSAPGMGTRIGIRLPLTLAILDGLIVAVEAVNYVIPLTYIVESLQARSDDVRGLGGEDNAMIRVRGEYLPLFSLHELLRIGGEAPAPEQGIVVILESEGRSFALQVDELVGQQQVVIKSLEQNFRRVEGIAGATIMGDGSVALILDVDALPRLAAREDTADERH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_C_3(1I5C)
CHEA_THEMA
[Raw transfer]



ADP_B_7(1I58)

[Raw transfer]



ACP_A_6(1I58)
CHEA_THEMA
[Raw transfer]



ANP_A_5(1I59)
CHEA_THEMA
[Raw transfer]



ACP_A_6(1I58)
CHEA_THEMA
[Raw transfer]



ADP_B_6(1I59)

[Raw transfer]



ACP_A_6(1I58)
CHEA_THEMA
[Raw transfer]



ACP_B_5(1I5A)

[Raw transfer]



ACP_A_6(1I5A)
CHEA_THEMA
[Raw transfer]



ANP_B_6(2CH4)

[Raw transfer]



ANP_A_5(2CH4)
CHEA_THEMA
[Raw transfer]



ANP_A_5(2CH4)
CHEA_THEMA
[Raw transfer]



128_D_4(1I5D)

[Raw transfer]
1 PsiBlast_PDB 88.2243%-115 - C1 -1B3Q - CHEA_THEMA -
49 HHSearch 88.0744%-118 - C1 -1B3Q - CHEA_THEMA -
21 PsiBlast_CBE 87.4143%-115 - C1 -1B3Q - CHEA_THEMA -
22 PsiBlast_CBE 79.7444%-121 - C1 -2CH4 4.9
40 Fugue 79.0344%-117 - C1 -2CH4 3.5 CHEA_THEMA
2 PsiBlast_PDB 78.0644%-117 - C1 -2CH4 3.5 CHEA_THEMA
41 Fugue 71.5743%-128 - C1 -3UR1 - CHEA_THEMA -
3 PsiBlast_PDB 70.3844%-126 - C1 -3UR1 - CHEA_THEMA -
25 PsiBlast_CBE 63.0150% -83 - C1 -1I58 4.2
7 PsiBlast_PDB 62.3750% -83 - C1 -1I59 5.2 CHEA_THEMA
23 PsiBlast_CBE 61.4050% -82 - C1 -1I5A 4.3
9 PsiBlast_PDB 60.4750% -85 - C1 -1I5C 5.6 CHEA_THEMA
8 PsiBlast_PDB 60.2750% -80 - C1 -1I5A 5.7 CHEA_THEMA
57 HHSearch 60.2051% -75 - C1 -1I58 6.0 CHEA_THEMA
6 PsiBlast_PDB 59.9050% -77 - C1 -1I58 6.0 CHEA_THEMA
42 Fugue 59.5050% -74 - C1 -1I58 6.0 CHEA_THEMA
24 PsiBlast_CBE 58.7050% -74 - C1 -1I59 4.3
5 PsiBlast_PDB 57.9051% -84 - C1 -1I5D 3.9
44 Fugue 56.2749% -89 - C1 -1B3Q - CHEA_THEMA -
10 PsiBlast_PDB 48.9348%-116 - C1 -2LP4 - CHEA_ECOLI -