@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0196: (2015-12-25 )
MSMNLVTLLYLIASVCFIQALKGLSHPTTSRRGNLFGMVGMAIAVATTVGLVFKLGAEIATTGVGYIVVGLLVGGTAGSIMAKRVEMTKMPELVAFMHSMIGLAAVFIAIAAVVEPQSLGIVAHLGDTIPTGNRLELFLGAAIGAITFSGSVIAFGKLSGKYKFRLFQGTPVQFSGQHLLNLVLGLATLGLGLVFMFTGNLTAFAVMLALAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGAEADAGGPAGSKEQRPVKSGSADDASFLLTNADSVIIVPGYGLAVARAQHALMELAEKLTHRGVTVKFAIHPVAGRMPGHMNVLLAEAEVPYEQVFEMEDINSEFGQTDVVLVLGANDVVNPAAKNDPKSPIAGMPILEAYKAKTVIVNKRSMASGYAGLDNELFYLDKTMMVFGDAKKVIEDMVKAVE

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_C_5(2FSV)

[Raw transfer]




NDP_F_6(1U2G)

[Raw transfer]




NAP_C_5(2FSV)

[Raw transfer]




NAP_E_5(2FR8)

[Raw transfer]




NAP_B_4(1PNO)

[Raw transfer]




NDP_B_4(1PNQ)

[Raw transfer]




NDP_A_3(1PNQ)
PNTB_RHORT
[Raw transfer]




NAP_A_3(1PNO)
PNTB_RHORT
[Raw transfer]




NAP_A_3(1PNO)
PNTB_RHORT
[Raw transfer]




NAP_A_5(1DJL)
NNTM_HUMAN
[Raw transfer]




NAP_F_6(1U31)

[Raw transfer]




NAP_B_6(1DJL)

[Raw transfer]




NAP_A_5(1DJL)
NNTM_HUMAN
[Raw transfer]




TXP_C_4(2OOR)

[Raw transfer]




NAP_E_5(1U31)
NNTM_HUMAN
[Raw transfer]




NAP_E_5(1HZZ)

[Raw transfer]




NAP_C_6(2FRD)

[Raw transfer]




NAP_C_9(4J16)
?
[Raw transfer]




NAP_C_6(1NM5)

[Raw transfer]




NAP_C_8(2OO5)

[Raw transfer]




NAP_C_5(1PTJ)

[Raw transfer]




TAP_E_5(1PT9)
NNTM_HUMAN
[Raw transfer]




NDP_F_6(1U2D)

[Raw transfer]




NAP_A_2(1D4O)

[Raw transfer]




NAP_C_6(1U28)

[Raw transfer]




NAP_A_2(1D4O)

[Raw transfer]




NAP_A_2(1D4O)

[Raw transfer]




TAP_F_6(1PT9)

[Raw transfer]




NAP_C_5(2BRU)

[Raw transfer]




NAP_C_5(2BRU)

[Raw transfer]




GOL_B_8(1DJL)

[Raw transfer]




GOL_G_7(1PT9)
NNTM_HUMAN
[Raw transfer]




APR_E_5(1U2G)

[Raw transfer]




NAD_E_5(1U2D)

[Raw transfer]




NAD_B_5(2FRD)

[Raw transfer]




1 PsiBlast_PDB 86.9043%-141 - C6 -4O9U - ? -
50 HHSearch 74.5364%-113 - C6 -1PNO 14.2 PNTB_RHORT
13 PsiBlast_PDB 74.1767%-120 - C6 -1PNO 14.2 PNTB_RHORT
48 HHSearch 74.0665%-117 - C6 -2FSV 12.5
11 PsiBlast_PDB 73.8767%-119 - C6 -2OO5 13.1
14 PsiBlast_PDB 73.7067%-116 - C6 -1PNQ 14.0 PNTB_RHORT
8 PsiBlast_PDB 73.6165%-117 - C6 -2FR8 12.2
2 PsiBlast_PDB 73.5065%-118 - C6 -2FSV 12.5
5 PsiBlast_PDB 73.3565%-122 - C6 -1U28 13.0
7 PsiBlast_PDB 73.2565%-118 - C6 -1U2G 13.2
21 PsiBlast_CBE 73.1067%-121 - C6 -1PNQ 13.9
22 PsiBlast_CBE 72.8167%-119 - C6 -1PNO 13.6
9 PsiBlast_PDB 72.5065%-114 - C6 -2FRD 12.2
10 PsiBlast_PDB 72.4567%-118 - C6 -1PTJ 11.6
24 PsiBlast_CBE 72.2467%-120 - C6 -1XLT - PNTB_RHORT -
47 HHSearch 72.1452%-110 * C6 *1DJL 13.1 NNTM_HUMAN
12 PsiBlast_PDB 72.1067%-117 - C6 -2OOR 10.3
23 PsiBlast_CBE 71.9667%-119 - C6 -1XLT - -
6 PsiBlast_PDB 71.6865%-116 - C6 -1U2D 12.6
15 PsiBlast_PDB 71.4367%-117 - C6 -1XLT - PNTB_RHORT -
69 Fugue 71.4152%-109 - C6 -1D4O 12.7
4 PsiBlast_PDB 71.3865%-116 - C6 -1NM5 13.1
49 HHSearch 71.1951%-109 - C6 -1D4O 12.7
3 PsiBlast_PDB 71.0765%-119 - C6 -1HZZ 11.2
18 PsiBlast_PDB 70.1853%-113 - C6 -1PT9 12.8 NNTM_HUMAN
19 PsiBlast_PDB 69.9553%-112 - C6 -1U31 12.3 NNTM_HUMAN
17 PsiBlast_PDB 69.8853%-114 - C6 -1DJL 13.0 NNTM_HUMAN
20 PsiBlast_PDB 69.6854%-113 - C6 -4J16 12.5 ?
25 PsiBlast_CBE 69.6153%-115 - C6 -1U31 12.6
27 PsiBlast_CBE 69.4253%-116 - C6 -1DJL 13.3
26 PsiBlast_CBE 68.8353%-113 - C6 -1PT9 12.7
51 HHSearch 67.1459%-108 - C6 -2BRU 11.8
16 PsiBlast_PDB 66.8561%-108 - C6 -2BRU 11.8
30 PsiBlast_CBE 66.8456%-110 - C6 -1D4O 12.7