@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0266: (2015-12-28 )
MSKTNESLLKRRQAAVPRGVGQIHPVVAERAENSTVWDVEGREYIDFAGGIAVLNTGHLHPKVIAAVQEQLGKLSHTCFQVLAYEPYIELAEEIAKRVPGDFPKKTLLVTSGSEAVENAVKIARAATGRAGVIAFTGAYHGRTMMTLGLTGKVVPYSAGMGLMPGGIFRALAPCELHGVSEDDSIASIERIFKNDAQPQDIAAIIIEPVQGEGGFYVNSKSFMQRLRALCDQHGILLIADEVQTGAGRTGTFFATEQLGIVPDLTTFAKSVGGGFPISGVAGKAEIMDAIAPGGLGGTYAGSPIACAAALAVLKVFEEEKLLERSQAVGERLKAGLREIQAKHKVIGDVRGLGSMVAIELFEGGDTHKPAAELVSKIVVRAREKGLILLSCGTYYNVIRFLMPVTIPDAQLEKGLAILAECFDELA

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P00_B_26(4JEX)
ARGD_SALTY
[Raw transfer]




P00_B_19(4JEW)
ARGD_SALTY
[Raw transfer]




POI_D_4(1WKG)
ARGD_THET8
[Raw transfer]




POI_C_3(1WKG)
ARGD_THET8
[Raw transfer]




PPE_D_4(1WKH)
ARGD_THET8
[Raw transfer]




PPE_C_3(1WKH)
ARGD_THET8
[Raw transfer]




PLP_A_4(2E54)
ARGD_THEMA
[Raw transfer]




PLP_A_3(2ORD)
ARGD_THEMA
[Raw transfer]




PMP_A_4(2E7U)
GSA_THET8
[Raw transfer]




PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]




PLP_B_13(4JEY)
ARGD_SALTY
[Raw transfer]




PMP_A_3(2CJG)
LAT_MYCTU
[Raw transfer]




PLP_A_3(2EO5)
?
[Raw transfer]




PLP_A_3(2EO5)
?
[Raw transfer]




PLP_A_3(1VEF)
ARGD_THET8
[Raw transfer]




PLP_A_3(1VEF)
ARGD_THET8
[Raw transfer]




PLP_B_4(2PB0)
ARGD_SALTY
[Raw transfer]




PLP_B_4(1VEF)
ARGD_THET8
[Raw transfer]




PLP_B_4(2EH6)
ARGD_AQUAE
[Raw transfer]




PLP_A_3(2EH6)
ARGD_AQUAE
[Raw transfer]




EDO_A_5(4JEX)
ARGD_SALTY
[Raw transfer]




21 PsiBlast_CBE 99.7073%-105 - C1 -1SFF - GABT_ECOLI -
23 PsiBlast_CBE 98.4373%-104 - C1 -1SFF - GABT_ECOLI -
33 PsiBlast_CBE 98.3273%-103 - C1 -1SZS - GABT_ECOLI -
27 PsiBlast_CBE 97.7873%-105 - C1 -1SZU - GABT_ECOLI -
35 PsiBlast_CBE 97.6173%-104 - C1 -1SZS - GABT_ECOLI -
24 PsiBlast_CBE 97.5473%-103 - C1 -1SF2 - GABT_ECOLI -
22 PsiBlast_CBE 97.0573%-104 - C1 -1SFF - GABT_ECOLI -
29 PsiBlast_CBE 96.8673%-103 - C1 -1SZU - GABT_ECOLI -
30 PsiBlast_CBE 96.7573%-102 - C1 -1SZK - GABT_ECOLI -
4 PsiBlast_PDB 96.6973%-102 - C1 -1SZK - GABT_ECOLI -
5 PsiBlast_PDB 96.6573%-103 - C1 -1SZS - GABT_ECOLI -
28 PsiBlast_CBE 96.4673%-105 - C1 -1SZU - GABT_ECOLI -
26 PsiBlast_CBE 96.4573%-102 - C1 -1SF2 - GABT_ECOLI -
3 PsiBlast_PDB 96.3873%-102 - C1 -1SZU - GABT_ECOLI -
2 PsiBlast_PDB 95.8973%-101 - C1 -1SFF - GABT_ECOLI -
25 PsiBlast_CBE 95.6073%-104 - C1 -1SF2 - GABT_ECOLI -
114 HHSearch 95.3974%-104 - C1 -1SFF - GABT_ECOLI -
31 PsiBlast_CBE 95.1873%-105 - C1 -1SZK - GABT_ECOLI -
34 PsiBlast_CBE 95.0773%-103 - C1 -1SZS - GABT_ECOLI -
1 PsiBlast_PDB 95.0673%-102 - C1 -1SF2 - GABT_ECOLI -
116 HHSearch 66.4136%-104 - C1 -1VEF 2.9 ARGD_THET8
129 HHSearch 63.6133%-101 * C1 *2ORD 4.4 ARGD_THEMA
71 PsiBlast_CBE 58.7733%-102 - C1 -2EO5 2.9 ?
72 PsiBlast_CBE 57.6934% -94 - C1 -2EH6 3.5 ARGD_AQUAE
58 PsiBlast_CBE 57.6534% -94 - C1 -4JEY 4.0 ARGD_SALTY
55 PsiBlast_CBE 57.3434% -93 - C1 -2PB0 3.2 ARGD_SALTY
53 PsiBlast_CBE 57.3334% -93 - C1 -4JEW 4.4 ARGD_SALTY
57 PsiBlast_CBE 56.7534% -94 - C1 -4JF1 4.3 ARGD_SALTY
56 PsiBlast_CBE 56.6634% -95 - C1 -4JEX 4.9 ARGD_SALTY
70 PsiBlast_CBE 56.0932% -94 - C1 -2E54 4.2 ARGD_THEMA
127 HHSearch 56.0233% -93 - C1 -2EO5 2.9 ?
73 PsiBlast_CBE 55.9234% -94 - C1 -2EH6 3.1 ARGD_AQUAE
83 PsiBlast_CBE 51.1735% -89 - C1 -1VEF 2.9 ARGD_THET8
80 PsiBlast_CBE 50.7335% -86 - C1 -1WKG 5.6 ARGD_THET8
79 PsiBlast_CBE 50.6335% -86 - C1 -1WKH 6.7 ARGD_THET8
82 PsiBlast_CBE 50.3535% -87 - C1 -1VEF 3.0 ARGD_THET8
81 PsiBlast_CBE 49.7035% -90 - C1 -1WKG 5.4 ARGD_THET8
78 PsiBlast_CBE 49.6835% -87 - C1 -1WKH 6.3 ARGD_THET8
131 HHSearch 49.0132% -91 - C1 -2E7U 3.9 GSA_THET8